Detail Information

Basic Information:


  VIRBase ID:  

VHID00033351

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 CTSL
miRBase
Accession/Entrez ID		 zikv-mir-4 1514
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CATL//CTSL1//MEP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CTSL
chr9:90345416(+) A-I      intronic
chr9:90345378(+) A-I      Syn:Glu->Glu
chr9:90345418(+) A-I      intronic
chr9:90345419(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CTSL
chr9:90340885-90340886(+) m6A 5'UTR       24981863
chr9:90340896-90340897(+) m6A 5'UTR       24981863
chr9:90340988-90340989(+) m6A 5'UTR       24981863
chr9:90340994-90340995(+) m6A 5'UTR       24981863
chr9:90341036-90341037(+) m6A 5'UTR//exon       24284625//25456834//24981863//26404942//27371828//22575960//22608085
chr9:90341135-90341136(+) m6A 5'UTR//exon       24284625//25456834//24981863//26404942//27371828//22575960//22608085
chr9:90341141-90341142(+) m6A 5'UTR//exon       24284625//25456834//24981863//26404942//27371828//22575960//22608085
chr9:90341206-90341207(+) m6A 5'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085
chr9:90341251-90341252(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085
chr9:90341307-90341308(+) m6A 5'UTR//intron       24981863//27773535//22575960
chr9:90342516-90342517(+) m6A 5'UTR//exon//intron       24981863//27773535//22575960
chr9:90342605-90342606(+) m6A CDS//exon//intron       24981863//27773535
chr9:90342948-90342949(+) m1A CDS//exon//intron       26863196
chr9:90342978-90342979(+) m6A CDS//exon//intron       24981863//27773535
chr9:90342994-90342995(+) m6A CDS//exon//intron       24981863//27773535
chr9:90343024-90343025(+) m6A CDS//exon//intron       24981863//27773535
chr9:90343059-90343060(+) m6A CDS//exon//intron       24981863//27773535
chr9:90343204-90343205(+) m6A CDS//exon//intron       27773535
chr9:90345313-90345314(+) m6A CDS//exon       27773535
chr9:90345328-90345329(+) m6A CDS//exon       24981863//27773535
chr9:90345409-90345410(+) m6A CDS//exon       24284625//24981863//26404942//27773535
chr9:90345969-90345970(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr9:90345978-90345979(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr9:90346046-90346047(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CTSL
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: CTSL

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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