Detail Information

Basic Information:


  VIRBase ID:  

VHID00033164

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 CDK4
miRBase
Accession/Entrez ID		 zikv-mir-4 1019
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CMM3//PSK-J3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CDK4
chr12:58144306(-) A-I      intronic
chr12:58144164(-) A-I      intronic
chr12:58142707(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CDK4
chr12:58142491(-) G-A intron -    22484847
chr12:58143571(-) T-C intron -    22484847
chr12:58143593(-) T-C intron -    22484847
chr12:58144164(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CDK4
chr12:58141854-58141855(-) m6A 3'UTR       27773535
chr12:58142034-58142035(-) m6A 3'UTR       24284625
chr12:58142039-58142040(-) m6A 3'UTR       24284625
chr12:58142255-58142256(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr12:58142987-58142988(-) Gm 3'UTR//CDS//exon       -
chr12:58145029-58145030(-) m6A CDS//exon//intron       27773535//22575960
chr12:58145039-58145040(-) m6A CDS//exon//intron       27773535//22575960
chr12:58145047-58145048(-) m6A CDS//exon//intron       27773535//22575960
chr12:58145053-58145054(-) m6A CDS//exon//intron       27773535//22575960
chr12:58145096-58145097(-) m6A CDS//exon//intron       27773535//22575960
chr12:58145194-58145195(-) m6A exon//intron       27773535
chr12:58145236-58145237(-) m6A exon//intron       27773535
chr12:58145445-58145446(-) m6A 5'UTR//CDS//exon//intron       22575960
chr12:58146013-58146014(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//22575960
chr12:58146042-58146043(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CDK4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: CDK4

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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