Detail Information

Basic Information:


  VIRBase ID:  

VHID00030741

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 BROX
miRBase
Accession/Entrez ID		 zikv-mir-3 148362
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - C1orf58

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BROX
chr1:222888156(+) A-I      intronic
chr1:222888801(+) A-I      intronic
chr1:222888840(+) A-I      intronic
chr1:222899197(+) A-I      intronic
chr1:222888841(+) A-I      intronic
chr1:222888144(+) A-I      intronic
chr1:222893934(+) A-I      intronic
chr1:222893953(+) A-I      intronic
chr1:222899089(+) A-I      intronic
chr1:222899173(+) A-I      intronic
chr1:222888169(+) A-I      intronic
chr1:222895784(+) A-I      NonSyn:Glu->Gly
chr1:222894035(+) A-I      intronic
chr1:222888132(+) A-I      intronic
chr1:222897162(+) A-I      intronic
chr1:222899148(+) A-I      intronic
chr1:222888136(+) A-I      intronic
chr1:222894032(+) A-I      intronic
chr1:222888157(+) A-I      intronic
chr1:222897269(+) A-I      intronic
chr1:222897239(+) A-I      intronic
chr1:222897222(+) A-I      intronic
chr1:222900029(+) A-I      intronic
chr1:222897150(+) A-I      intronic
chr1:222897160(+) A-I      intronic
chr1:222897223(+) A-I      intronic
chr1:222888830(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BROX
chr1:222888136(+) A-I intron -    21960545   //22327324
chr1:222888157(+) A-I intron -    21960545
chr1:222888132(+) A-G intron -    22484847
chr1:222888136(+) A-G intron -    22484847
chr1:222888157(+) A-G intron -    22484847
chr1:222888830(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BROX
chr1:222885993-222885994(+) m6A 5'UTR//exon       24284625//24981863
chr1:222886060-222886061(+) m6A 5'UTR//exon       24284625//24981863
chr1:222886257-222886258(+) m6A 5'UTR//exon       24981863
chr1:222886265-222886266(+) m6A 5'UTR//exon       24981863
chr1:222886719-222886720(+) m6A 5'UTR//exon//intron       24981863
chr1:222886931-222886932(+) m6A exon//intron       24981863
chr1:222886941-222886942(+) m6A exon//intron       24981863
chr1:222886948-222886949(+) m6A exon//intron       24981863
chr1:222886991-222886992(+) m6A exon//intron       24981863
chr1:222897496-222897497(+) m6A CDS//exon       24981863
chr1:222898808-222898809(+) m6A CDS//exon       24981863
chr1:222900531-222900532(+) m6A CDS//exon       24981863
chr1:222904804-222904805(+) m6A CDS//intron       22608085
chr1:222904813-222904814(+) m6A CDS//intron       22608085
chr1:222904842-222904843(+) m6A CDS//intron       24981863//27773535//22608085
chr1:222905974-222905975(+) m6A CDS       24981863//27773535//22608085
chr1:222905980-222905981(+) m6A CDS       24981863//27773535//22608085
chr1:222905998-222905999(+) m6A 3'UTR//CDS       24981863//22608085
chr1:222906010-222906011(+) m6A 3'UTR//CDS       24981863//22608085
chr1:222906015-222906016(+) m6A 3'UTR//CDS       24981863//22608085
chr1:222906022-222906023(+) m6A 3'UTR//CDS       24981863//22608085
chr1:222906033-222906034(+) m6A 3'UTR//CDS       24981863//22608085
chr1:222906100-222906101(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate BROX
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: BROX

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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