Detail Information

Basic Information:


  VIRBase ID:  

VHID00030724

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 CAPN12
miRBase
Accession/Entrez ID		 zikv-mir-3 147968
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CAPN12
chr19:39231378(-) A-I      intronic
chr19:39223061(-) A-I      intronic
chr19:39223078(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CAPN12
chr19:39229969(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CAPN12
chr19:39220976-39220977(-) m6A 3'UTR       26404942//27773535//22575960
chr19:39220993-39220994(-) m6A 3'UTR       26404942//27773535//22575960
chr19:39221054-39221055(-) m6A 3'UTR       27773535
chr19:39221083-39221084(-) m6A 3'UTR       27773535
chr19:39221110-39221111(-) m6A 3'UTR//exon       27773535//27371828
chr19:39221210-39221211(-) m6A 3'UTR//exon       27773535//27371828
chr19:39221250-39221251(-) m6A 3'UTR//exon       27773535//27371828
chr19:39221307-39221308(-) m6A 3'UTR//exon       27773535
chr19:39221313-39221314(-) m6A 3'UTR//exon       27773535
chr19:39221607-39221608(-) m6A 3'UTR//CDS//exon       27371828
chr19:39221793-39221794(-) m6A 3'UTR//CDS//exon       27773535//27371828
chr19:39221833-39221834(-) m6A 3'UTR//CDS//exon       27773535//27371828
chr19:39221850-39221851(-) m6A 3'UTR//CDS//exon       27773535//27371828
chr19:39226219-39226220(-) m6A exon//intron       24981863
chr19:39226250-39226251(-) m6A exon//intron       27773535
chr19:39226274-39226275(-) m6A exon//intron       24981863//27773535
chr19:39227261-39227262(-) m6A exon//intron       27773535
chr19:39227303-39227304(-) m1A exon//intron       26863196
chr19:39227344-39227345(-) m6A exon//intron       27773535
chr19:39227425-39227426(-) m6A exon//intron       25456834//27773535
chr19:39227461-39227462(-) m6A exon//intron       25456834//27773535
chr19:39227481-39227482(-) m6A exon//intron       25456834
chr19:39227485-39227486(-) m6A exon//intron       25456834//27773535
chr19:39228016-39228017(-) m6A CDS       -
chr19:39228025-39228026(-) m6A CDS       -
chr19:39228263-39228264(-) m6A CDS       25456834
chr19:39228972-39228973(-) m6A CDS       25456834
chr19:39229099-39229100(-) m6A CDS       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CAPN12
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: CAPN12

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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