Detail Information

Basic Information:


  VIRBase ID:  

VHID00028887

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 C2orf49
miRBase
Accession/Entrez ID		 zikv-mir-3 79074
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - asw

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C2orf49
chr2:105962346(+) A-I      3'UTR
chr2:105962332(+) A-I      3'UTR
chr2:105962313(+) A-I      3'UTR
chr2:105962341(+) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C2orf49
chr2:105956043-105956044(+) m6A CDS       27773535
chr2:105956057-105956058(+) m6A CDS       27773535
chr2:105956073-105956074(+) m6A CDS       27773535
chr2:105956079-105956080(+) m6A CDS       27773535
chr2:105956176-105956177(+) m6A CDS       24981863//27773535//22608085
chr2:105956198-105956199(+) m6A CDS       24981863//27773535//22608085
chr2:105959334-105959335(+) m6A CDS       24981863//27773535//22608085
chr2:105959389-105959390(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:105959519-105959520(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:105959532-105959533(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:105959553-105959554(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:105959558-105959559(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:105959626-105959627(+) m6A CDS       24284625//24209618//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate C2orf49
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: C2orf49

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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