Detail Information

Basic Information:


  VIRBase ID:  

VHID00027830

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 CCDC91
miRBase
Accession/Entrez ID		 zikv-mir-3 55297
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - HSD8//p56

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCDC91
chr12:28593816(+) A-I      intronic
chr12:28593871(+) A-I      intronic
chr12:28541505(+) A-I      intronic
chr12:28541540(+) A-I      intronic
chr12:28541510(+) A-I      intronic
chr12:28541503(+) A-I      intronic
chr12:28593870(+) A-I      intronic
chr12:28541495(+) A-I      intronic
chr12:28593844(+) A-I      intronic
chr12:28541476(+) A-I      intronic
chr12:28593835(+) A-I      intronic
chr12:28541506(+) A-I      intronic
chr12:28444845(+) A-I      intronic
chr12:28521845(+) A-I      intronic
chr12:28593827(+) A-I      intronic
chr12:28593848(+) A-I      intronic
chr12:28600529(+) A-I      intronic
chr12:28442689(+) A-I      intronic
chr12:28442680(+) A-I      intronic
chr12:28421264(+) A-I      intronic
chr12:28488410(+) A-I      intronic
chr12:28457336(+) A-I      intronic
chr12:28581248(+) A-I      intronic
chr12:28446731(+) A-I      intronic
chr12:28516632(+) A-I      intronic
chr12:28600528(+) A-I      intronic
chr12:28486165(+) A-I      intronic
chr12:28599496(+) A-I      intronic
chr12:28593737(+) A-I      intronic
chr12:28457255(+) A-I      intronic
chr12:28593753(+) A-I      intronic
chr12:28457322(+) A-I      intronic
chr12:28599522(+) A-I      intronic
chr12:28486117(+) A-I      intronic
chr12:28600546(+) A-I      intronic
chr12:28486162(+) A-I      intronic
chr12:28599620(+) A-I      intronic
chr12:28572713(+) A-I      intronic
chr12:28437590(+) A-I      intronic
chr12:28486181(+) A-I      intronic
chr12:28599660(+) A-I      intronic
chr12:28521875(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CCDC91
chr12:28467114(+) A-T intron -    22484847
chr12:28521875(+) A-G intron -    22484847
chr12:28593753(+) A-G intron -    22484847
chr12:28594017(+) A-G intron -    22484847
chr12:28446731(+) A-G intron -    22484847
chr12:28516638(+) G-A intron -    22484847
chr12:28572713(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCDC91
chr12:28336768-28336769(+) m6A 5'UTR//CDS//intron       24981863
chr12:28344197-28344198(+) m6A 5'UTR//intron       -
chr12:28459862-28459863(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535
chr12:28459874-28459875(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535
chr12:28460675-28460676(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535
chr12:28515375-28515376(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535
chr12:28515381-28515382(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535
chr12:28515395-28515396(+) m6A 3'UTR//CDS//exon//intron       24981863
chr12:28544283-28544284(+) m6A 3'UTR//CDS//exon//intron       24981863
chr12:28544307-28544308(+) m6A 3'UTR//CDS//exon//intron       27773535
chr12:28603131-28603132(+) m6A 3'UTR//CDS//exon       24981863//27773535
chr12:28603179-28603180(+) m6A 3'UTR//CDS//exon       24981863//27773535
chr12:28605509-28605510(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr12:28605514-28605515(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr12:28605568-28605569(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr12:28636987-28636988(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr12:28637056-28637057(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr12:28637088-28637089(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr12:28637138-28637139(+) m6A 3'UTR//intron       24981863//27773535//22608085
chr12:28658377-28658378(+) m5C intron       23604283

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CCDC91
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: CCDC91

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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