Detail Information

Basic Information:


  VIRBase ID:  

VHID00027586

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 NUP62CL
miRBase
Accession/Entrez ID		 zikv-mir-3 54830
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NUP62CL
chrX:106375786(-) A-I      intronic
chrX:106377085(-) A-I      intronic
chrX:106377086(-) A-I      intronic
chrX:106386662(-) A-I      intronic
chrX:106432981(-) A-I      intronic
chrX:106375771(-) A-I      intronic
chrX:106375801(-) A-I      intronic
chrX:106429980(-) A-I      intronic
chrX:106430028(-) A-I      intronic
chrX:106375949(-) A-I      intronic
chrX:106430041(-) A-I      intronic
chrX:106375953(-) A-I      intronic
chrX:106375942(-) A-I      intronic
chrX:106435707(-) A-I      intronic
chrX:106430106(-) A-I      intronic
chrX:106430113(-) A-I      intronic
chrX:106375863(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NUP62CL
chrX:106375228(-) A-I intron -    22327324

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NUP62CL
chrX:106367045-106367046(-) m6A 3'UTR       24981863//27773535
chrX:106436266-106436267(-) m6A 5'UTR//intron       24981863
chrX:106449530-106449531(-) m6A 5'UTR       24981863
chrX:106449587-106449588(-) m6A 5'UTR       24981863
chrX:106449634-106449635(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NUP62CL
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: NUP62CL

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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