Detail Information

Basic Information:


  VIRBase ID:  

VHID00027357

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 TDP2
miRBase
Accession/Entrez ID		 zikv-mir-3 51567
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - AD022//dJ30M3.3//EAP2//EAPII//hTDP2//TTRAP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TDP2
chr6:24655118(-) A-I      intronic
chr6:24652088(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TDP2
chr6:24651076-24651077(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr6:24651081-24651082(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr6:24651100-24651101(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr6:24651123-24651124(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr6:24651168-24651169(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr6:24651199-24651200(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr6:24651231-24651232(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr6:24651237-24651238(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr6:24658939-24658940(-) m6A CDS//exon//intron       27773535
chr6:24659115-24659116(-) m6A exon//intron       24981863
chr6:24666437-24666438(-) m6A 5'UTR//exon//intron       24981863
chr6:24666456-24666457(-) m6A 5'UTR//exon//intron       24981863
chr6:24666553-24666554(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27371828//22608085
chr6:24666679-24666680(-) m6A 5'UTR//exon//intron       25456834//27371828
chr6:24666757-24666758(-) m6A 5'UTR//CDS//exon       24284625//24209618//27773535//27371828//27773536
chr6:24666775-24666776(-) m6A 5'UTR//CDS//exon       24284625//24209618//27773535//27371828//27773536
chr6:24666828-24666829(-) m6A CDS//exon       24284625//24209618//25456834//27773535//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TDP2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: TDP2

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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