Detail Information

Basic Information:


  VIRBase ID:  

VHID00027085

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 SNX12
miRBase
Accession/Entrez ID		 zikv-mir-3 29934
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SNX12
chrX:70282387(-) A-I      intronic
chrX:70285649(-) A-I      intronic
chrX:70282360(-) A-I      intronic
chrX:70282416(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNX12
chrX:70280613-70280614(-) m6A 3'UTR//exon//intron       24209618
chrX:70280668-70280669(-) m6A 3'UTR//exon//intron       24209618//24981863
chrX:70280751-70280752(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22608085
chrX:70280836-70280837(-) Y 3'UTR//exon//intron       26075521
chrX:70280893-70280894(-) m6A CDS//exon//intron       24284625
chrX:70282794-70282795(-) m6A CDS//exon       22575960
chrX:70288103-70288104(-) m6A CDS//exon       27773535//22575960
chrX:70288148-70288149(-) m6A CDS//exon       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SNX12
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: SNX12

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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