Detail Information

Basic Information:


  VIRBase ID:  

VHID00026405

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 VPS13A
miRBase
Accession/Entrez ID		 zikv-mir-3 23230
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CHAC//CHOREIN

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR VPS13A
chr9:79917455(+) A-I      intronic
chr9:79917472(+) A-I      intronic
chr9:79964567(+) A-I      intronic
chr9:79964639(+) A-I      intronic
chr9:79875411(+) A-I      intronic
chr9:79800872(+) A-I      intronic
chr9:79810438(+) A-I      intronic
chr9:79810206(+) A-I      intronic
chr9:79828513(+) A-I      intronic
chr9:80004255(+) A-I      intronic
chr9:79800122(+) A-I      intronic
chr9:79808477(+) A-I      intronic
chr9:79800933(+) A-I      intronic
chr9:79800883(+) A-I      intronic
chr9:79800866(+) A-I      intronic
chr9:79800299(+) A-I      intronic
chr9:79797159(+) A-I      intronic
chr9:79979170(+) A-I      intronic
chr9:79978404(+) A-I      intronic
chr9:79810546(+) A-I      intronic
chr9:79810559(+) A-I      intronic
chr9:79818832(+) A-I      intronic
chr9:79810562(+) A-I      intronic
chr9:79810578(+) A-I      intronic
chr9:79813683(+) A-I      intronic
chr9:79818851(+) A-I      intronic
chr9:79818871(+) A-I      intronic
chr9:79828474(+) A-I      intronic
chr9:79962990(+) A-I      intronic
chr9:79962959(+) A-I      intronic
chr9:79828487(+) A-I      intronic
chr9:79962970(+) A-I      intronic
chr9:79960997(+) A-I      intronic
chr9:79799261(+) A-I      intronic
chr9:79799279(+) A-I      intronic
chr9:79799357(+) A-I      intronic
chr9:79799373(+) A-I      intronic
chr9:79799377(+) A-I      intronic
chr9:79828556(+) A-I      intronic
chr9:79828583(+) A-I      intronic
chr9:79828672(+) A-I      intronic
chr9:79828681(+) A-I      intronic
chr9:79828682(+) A-I      intronic
chr9:79852056(+) A-I      intronic
chr9:79872203(+) A-I      intronic
chr9:79872571(+) A-I      intronic
chr9:79872596(+) A-I      intronic
chr9:79810301(+) A-I      intronic
chr9:79801453(+) A-I      intronic
chr9:80004361(+) A-I      intronic
chr9:80004363(+) A-I      intronic
chr9:79801479(+) A-I      intronic
chr9:79883709(+) A-I      intronic
chr9:79800769(+) A-I      intronic
chr9:79979210(+) A-I      intronic
chr9:79810169(+) A-I      intronic
chr9:79818867(+) A-I      intronic
chr9:79872546(+) A-I      intronic
chr9:79883713(+) A-I      intronic
chr9:79818878(+) A-I      intronic
chr9:79797069(+) A-I      intronic
chr9:79934028(+) A-I      intronic
chr9:79800082(+) A-I      intronic
chr9:79819828(+) A-I      intronic
chr9:79801397(+) A-I      intronic
chr9:79797271(+) A-I      intronic
chr9:79872579(+) A-I      intronic
chr9:79796353(+) A-I      intronic
chr9:79800923(+) A-I      intronic
chr9:79810302(+) A-I      intronic
chr9:79810474(+) A-I      intronic
chr9:79800946(+) A-I      intronic
chr9:80004260(+) A-I      intronic
chr9:79828546(+) A-I      intronic
chr9:79810144(+) A-I      intronic
chr9:79828589(+) A-I      intronic
chr9:79810533(+) A-I      intronic
chr9:79810466(+) A-I      intronic
chr9:79872459(+) A-I      intronic
chr9:79872255(+) A-I      intronic
chr9:79815490(+) A-I      intronic
chr9:79796279(+) A-I      intronic
chr9:79801454(+) A-I      intronic
chr9:79801480(+) A-I      intronic
chr9:79800787(+) A-I      intronic
chr9:80009193(+) A-I      intronic
chr9:80005688(+) A-I      intronic
chr9:79872298(+) A-I      intronic
chr9:79964782(+) A-I      intronic
chr9:79799257(+) A-I      intronic
chr9:79797272(+) A-I      intronic
chr9:79801540(+) A-I      intronic
chr9:79799424(+) A-I      intronic
chr9:79797109(+) A-I      intronic
chr9:79801534(+) A-I      intronic
chr9:79800771(+) A-I      intronic
chr9:79801483(+) A-I      intronic
chr9:79829001(+) A-I      intronic
chr9:79800937(+) A-I      intronic
chr9:79810443(+) A-I      intronic
chr9:79796276(+) A-I      intronic
chr9:79797151(+) A-I      intronic
chr9:79810205(+) A-I      intronic
chr9:79979185(+) A-I      intronic
chr9:79796387(+) A-I      intronic
chr9:80009197(+) A-I      intronic
chr9:79797193(+) A-I      intronic
chr9:79815566(+) A-I      intronic
chr9:79819754(+) A-I      intronic
chr9:79859031(+) A-I      intronic
chr9:79796321(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED VPS13A
chr9:79810104(+) A-I intron -    15342557
chr9:79810169(+) A-I intron -    15342557
chr9:79810474(+) A-I intron -    15342557
chr9:79810506(+) A-I intron -    15342557
chr9:79810533(+) A-I intron -    15342557
chr9:79825076(+) C-T intron -    22484847
chr9:79810301(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase VPS13A
chr9:79792532-79792533(+) m6A 5'UTR       24981863
chr9:79792618-79792619(+) m6A 5'UTR       24981863
chr9:79820924-79820925(+) m6A CDS       24981863
chr9:79820951-79820952(+) m6A CDS       24981863//27773535
chr9:79820975-79820976(+) m6A CDS       24981863//27773535
chr9:79824357-79824358(+) m6A CDS       27773535
chr9:79824362-79824363(+) m6A CDS       27773535
chr9:79836253-79836254(+) m6A CDS       27773535
chr9:79840853-79840854(+) m6A CDS       27773535
chr9:79933213-79933214(+) m6A 3'UTR//CDS//exon       24284625//22608085
chr9:79933273-79933274(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr9:79933309-79933310(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr9:79933367-79933368(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr9:79934553-79934554(+) m6A 3'UTR//CDS//exon       24981863
chr9:79934567-79934568(+) m6A 3'UTR//CDS//exon       24981863
chr9:79985219-79985220(+) m6A CDS       -
chr9:79985405-79985406(+) m6A CDS       -
chr9:79985840-79985841(+) m6A CDS       -
chr9:79986031-79986032(+) m6A CDS       27773535
chr9:79996901-79996902(+) m6A CDS       27773535
chr9:79996960-79996961(+) m6A CDS       27773535
chr9:80031022-80031023(+) Y 3'UTR       26075521
chr9:80031047-80031048(+) m6A 3'UTR       24981863//27773535//22608085
chr9:80031053-80031054(+) m6A 3'UTR       24981863//27773535//22608085
chr9:80031065-80031066(+) m6A 3'UTR       24981863//27773535//22608085
chr9:80031071-80031072(+) m6A 3'UTR       24981863//27773535//22608085
chr9:80031079-80031080(+) m6A 3'UTR       24981863//27773535//22608085
chr9:80031084-80031085(+) m6A 3'UTR       24981863//27773535//22608085
chr9:80031100-80031101(+) m6A 3'UTR       24981863
chr9:80031715-80031716(+) Y 3'UTR       26075521
chr9:80032042-80032043(+) m6A 3'UTR       24981863//22608085
chr9:80032080-80032081(+) m6A 3'UTR       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate VPS13A
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: VPS13A

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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