Detail Information

Basic Information:


  VIRBase ID:  

VHID00024931

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 PABPC4
miRBase
Accession/Entrez ID		 zikv-mir-3 8761
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - APP-1//APP1//iPABP//PABP4

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PABPC4
chr1:40026990(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PABPC4
chr1:40026888-40026889(-) m6A exon//intron       27773535
chr1:40029270-40029271(-) m6A exon//intron       22575960
chr1:40030820-40030821(-) Y 3'UTR//CDS//exon       25219674//26075521
chr1:40033495-40033496(-) m6A 3'UTR//CDS//exon       24981863//28052920//27773535
chr1:40033580-40033581(-) m6A exon//intron       24981863//28052920//27773535
chr1:40034497-40034498(-) m6A 3'UTR//CDS//exon       24981863//28052920//27773535//22575960//22608085
chr1:40034506-40034507(-) m6A 3'UTR//CDS//exon       24981863//28052920//27773535//22575960//22608085
chr1:40035284-40035285(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535
chr1:40035355-40035356(-) m6A 3'UTR//CDS//exon//intron       24981863
chr1:40038122-40038123(-) Tm CDS       -
chr1:40038131-40038132(-) m6A CDS       27773535
chr1:40038137-40038138(-) m6A CDS       27773535
chr1:40038233-40038234(-) m6A CDS       27773535//22575960
chr1:40038242-40038243(-) m6A CDS       27773535//22575960
chr1:40041882-40041883(-) m6A 5'UTR       24284625//26404942//22575960
chr1:40042046-40042047(-) m6A 5'UTR//intron       24209618
chr1:40042317-40042318(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PABPC4
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: PABPC4

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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