Detail Information

Basic Information:


  VIRBase ID:  

VHID00024834

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 API5
miRBase
Accession/Entrez ID		 zikv-mir-3 8539
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - AAC-11//AAC11

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR API5
chr11:43362067(+) A-I      intronic
chr11:43362100(+) A-I      intronic
chr11:43362101(+) A-I      intronic
chr11:43362128(+) A-I      intronic
chr11:43339677(+) A-I      intronic
chr11:43342093(+) A-I      intronic
chr11:43362135(+) A-I      intronic
chr11:43341856(+) A-I      intronic
chr11:43341183(+) A-I      intronic
chr11:43345733(+) A-I      intronic
chr11:43342173(+) A-I      intronic
chr11:43342045(+) A-I      intronic
chr11:43338196(+) A-I      intronic
chr11:43342131(+) A-I      intronic
chr11:43339591(+) A-I      intronic
chr11:43334456(+) A-I      intronic
chr11:43339618(+) A-I      intronic
chr11:43338347(+) A-I      intronic
chr11:43338350(+) A-I      intronic
chr11:43339585(+) A-I      intronic
chr11:43339634(+) A-I      intronic
chr11:43339370(+) A-I      intronic
chr11:43346059(+) A-I      intronic
chr11:43341184(+) A-I      intronic
chr11:43341228(+) A-I      intronic
chr11:43345725(+) A-I      intronic
chr11:43339449(+) A-I      intronic
chr11:43334498(+) A-I      intronic
chr11:43335361(+) A-I      intronic
chr11:43345713(+) A-I      intronic
chr11:43346096(+) A-I      intronic
chr11:43346050(+) A-I      intronic
chr11:43346121(+) A-I      intronic
chr11:43335397(+) A-I      intronic
chr11:43339583(+) A-I      intronic
chr11:43342112(+) A-I      intronic
chr11:43342138(+) A-I      intronic
chr11:43339500(+) A-I      intronic
chr11:43341050(+) A-I      intronic
chr11:43346051(+) A-I      intronic
chr11:43339345(+) A-I      intronic
chr11:43342130(+) A-I      intronic
chr11:43339488(+) A-I      intronic
chr11:43339408(+) A-I      intronic
chr11:43335398(+) A-I      intronic
chr11:43346119(+) A-I      intronic
chr11:43345806(+) A-I      intronic
chr11:43345363(+) A-I      intronic
chr11:43339660(+) A-I      intronic
chr11:43342038(+) A-I      intronic
chr11:43342230(+) A-I      intronic
chr11:43345829(+) A-I      intronic
chr11:43342069(+) A-I      intronic
chr11:43341197(+) A-I      intronic
chr11:43345782(+) A-I      intronic
chr11:43341042(+) A-I      intronic
chr11:43339327(+) A-I      intronic
chr11:43339769(+) A-I      intronic
chr11:43345751(+) A-I      intronic
chr11:43339773(+) A-I      intronic
chr11:43335414(+) A-I      intronic
chr11:43346044(+) A-I      intronic
chr11:43335478(+) A-I      intronic
chr11:43339699(+) A-I      intronic
chr11:43342238(+) A-I      intronic
chr11:43338334(+) A-I      intronic
chr11:43342220(+) A-I      intronic
chr11:43339701(+) A-I      intronic
chr11:43342215(+) A-I      intronic
chr11:43339328(+) A-I      intronic
chr11:43339709(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED API5
chr11:43345751(+) A-G intron -    22484847
chr11:43345782(+) A-G intron -    22484847
chr11:43346119(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase API5
chr11:43333637-43333638(+) m6A 5'UTR//exon       24981863
chr11:43333651-43333652(+) m6A 5'UTR//exon       24981863
chr11:43360808-43360809(+) m6A exon//intron       22608085
chr11:43360816-43360817(+) m6A exon//intron       22608085
chr11:43360832-43360833(+) m6A exon//intron       24981863//22608085
chr11:43360907-43360908(+) m6A exon//intron       24981863//22608085
chr11:43360915-43360916(+) m6A exon//intron       24209618//24981863//22608085
chr11:43364050-43364051(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//22608085
chr11:43364065-43364066(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085
chr11:43364147-43364148(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085
chr11:43364171-43364172(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085
chr11:43364219-43364220(+) m6A 3'UTR       24981863//22608085
chr11:43364242-43364243(+) m6A 3'UTR       24981863//22608085
chr11:43364308-43364309(+) m6A 3'UTR       -
chr11:43364331-43364332(+) m6A 3'UTR       -
chr11:43365609-43365610(+) m6A 3'UTR       24981863//27773535
chr11:43365621-43365622(+) m6A 3'UTR       24981863//27773535
chr11:43365633-43365634(+) m6A 3'UTR       24981863//27773535
chr11:43365639-43365640(+) m6A 3'UTR       24981863//27773535
chr11:43365656-43365657(+) m6A 3'UTR       24981863//27773535
chr11:43365685-43365686(+) m6A 3'UTR       24981863
chr11:43365703-43365704(+) m6A 3'UTR       24981863
chr11:43365831-43365832(+) m6A 3'UTR       27773535
chr11:43365838-43365839(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate API5
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: API5

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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