Detail Information

Basic Information:


  VIRBase ID:  

VHID00024267

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 SS18
miRBase
Accession/Entrez ID		 zikv-mir-3 6760
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - SSXT//SYT

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SS18
chr18:23658716(-) A-I      intronic
chr18:23658788(-) A-I      intronic
chr18:23635219(-) A-I      intronic
chr18:23635312(-) A-I      intronic
chr18:23635319(-) A-I      intronic
chr18:23635331(-) A-I      intronic
chr18:23635348(-) A-I      intronic
chr18:23635349(-) A-I      intronic
chr18:23643217(-) A-I      intronic
chr18:23604532(-) A-I      intronic
chr18:23604536(-) A-I      intronic
chr18:23604554(-) A-I      intronic
chr18:23621325(-) A-I      intronic
chr18:23659722(-) A-I      intronic
chr18:23659834(-) A-I      intronic
chr18:23661343(-) A-I      intronic
chr18:23661358(-) A-I      intronic
chr18:23661373(-) A-I      intronic
chr18:23661411(-) A-I      intronic
chr18:23661811(-) A-I      intronic
chr18:23661940(-) A-I      intronic
chr18:23661973(-) A-I      intronic
chr18:23629573(-) A-I      intronic
chr18:23629613(-) A-I      intronic
chr18:23629707(-) A-I      intronic
chr18:23634793(-) A-I      intronic
chr18:23634801(-) A-I      intronic
chr18:23634810(-) A-I      intronic
chr18:23634816(-) A-I      intronic
chr18:23634820(-) A-I      intronic
chr18:23634843(-) A-I      intronic
chr18:23634885(-) A-I      intronic
chr18:23634903(-) A-I      intronic
chr18:23634907(-) A-I      intronic
chr18:23634910(-) A-I      intronic
chr18:23634922(-) A-I      intronic
chr18:23634930(-) A-I      intronic
chr18:23634935(-) A-I      intronic
chr18:23643449(-) A-I      intronic
chr18:23634967(-) A-I      intronic
chr18:23635187(-) A-I      intronic
chr18:23635291(-) A-I      intronic
chr18:23661787(-) A-I      intronic
chr18:23661927(-) A-I      intronic
chr18:23635307(-) A-I      intronic
chr18:23635267(-) A-I      intronic
chr18:23634778(-) A-I      intronic
chr18:23634882(-) A-I      intronic
chr18:23604448(-) A-I      intronic
chr18:23630007(-) A-I      intronic
chr18:23662014(-) A-I      intronic
chr18:23630187(-) A-I      intronic
chr18:23634873(-) A-I      intronic
chr18:23661427(-) A-I      intronic
chr18:23659723(-) A-I      intronic
chr18:23635426(-) A-I      intronic
chr18:23635265(-) A-I      intronic
chr18:23626029(-) A-I      intronic
chr18:23661419(-) A-I      intronic
chr18:23661328(-) A-I      intronic
chr18:23635282(-) A-I      intronic
chr18:23629626(-) A-I      intronic
chr18:23661856(-) A-I      intronic
chr18:23635268(-) A-I      intronic
chr18:23659716(-) A-I      intronic
chr18:23630077(-) A-I      intronic
chr18:23634940(-) A-I      intronic
chr18:23661850(-) A-I      intronic
chr18:23659795(-) A-I      intronic
chr18:23658807(-) A-I      intronic
chr18:23661777(-) A-I      intronic
chr18:23661323(-) A-I      intronic
chr18:23635283(-) A-I      intronic
chr18:23634881(-) A-I      intronic
chr18:23659715(-) A-I      intronic
chr18:23661805(-) A-I      intronic
chr18:23661331(-) A-I      intronic
chr18:23635374(-) A-I      intronic
chr18:23659769(-) A-I      intronic
chr18:23661449(-) A-I      intronic
chr18:23661939(-) A-I      intronic
chr18:23635368(-) A-I      intronic
chr18:23661907(-) A-I      intronic
chr18:23634842(-) A-I      intronic
chr18:23661913(-) A-I      intronic
chr18:23661842(-) A-I      intronic
chr18:23659630(-) A-I      intronic
chr18:23662009(-) A-I      intronic
chr18:23661900(-) A-I      intronic
chr18:23661349(-) A-I      intronic
chr18:23635309(-) A-I      intronic
chr18:23659803(-) A-I      intronic
chr18:23634868(-) A-I      intronic
chr18:23658751(-) A-I      intronic
chr18:23629507(-) A-I      intronic
chr18:23659580(-) A-I      intronic
chr18:23661286(-) A-I      intronic
chr18:23629729(-) A-I      intronic
chr18:23634876(-) A-I      intronic
chr18:23658849(-) A-I      intronic
chr18:23659675(-) A-I      intronic
chr18:23659717(-) A-I      intronic
chr18:23635228(-) A-I      intronic
chr18:23661978(-) A-I      intronic
chr18:23661293(-) A-I      intronic
chr18:23661337(-) A-I      intronic
chr18:23658739(-) A-I      intronic
chr18:23661322(-) A-I      intronic
chr18:23661292(-) A-I      intronic
chr18:23659711(-) A-I      intronic
chr18:23661332(-) A-I      intronic
chr18:23661413(-) A-I      intronic
chr18:23629639(-) A-I      intronic
chr18:23635384(-) A-I      intronic
chr18:23635873(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SS18
chr18:23661900(-) A-I intron -    22327324
chr18:23661322(-) A-I intron -    21960545
chr18:23661850(-) A-I intron -    21960545
chr18:23658658(-) A-G intron -    22484847
chr18:23658739(-) A-G intron -    22484847
chr18:23659716(-) A-G intron -    22484847
chr18:23659717(-) A-G intron -    22484847
chr18:23659769(-) A-G intron -    22484847
chr18:23661196(-) A-G intron -    22484847
chr18:23661266(-) A-G intron -    22484847
chr18:23661292(-) A-G intron -    22484847
chr18:23661322(-) A-G intron -    22484847
chr18:23661323(-) A-G intron -    22484847
chr18:23661337(-) A-G intron -    22484847
chr18:23661850(-) A-G intron -    22484847
chr18:23661900(-) A-G intron -    22484847
chr18:23661939(-) A-G intron -    22484847
chr18:23661978(-) A-G intron -    22484847
chr18:23662009(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SS18
chr18:23597744-23597745(-) m6A 3'UTR       27773535
chr18:23597810-23597811(-) m6A 3'UTR       24209618//24981863//27773535
chr18:23597816-23597817(-) m6A 3'UTR       24209618//24981863//27773535
chr18:23597845-23597846(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr18:23598004-23598005(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr18:23598018-23598019(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr18:23598028-23598029(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr18:23598044-23598045(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr18:23598086-23598087(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr18:23598204-23598205(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr18:23598252-23598253(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr18:23598341-23598342(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr18:23603583-23603584(-) m6A exon//intron       24284625//24209618//24981863//28052920//27773535//22608085
chr18:23612404-23612405(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr18:23612419-23612420(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr18:23612446-23612447(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr18:23614984-23614985(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535
chr18:23615050-23615051(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535
chr18:23615130-23615131(-) m6A exon//intron       27773535
chr18:23618580-23618581(-) m6A 3'UTR//CDS       27773535
chr18:23618592-23618593(-) m6A 3'UTR//CDS       27773535
chr18:23619265-23619266(-) m6A 3'UTR//CDS       27773535
chr18:23619283-23619284(-) m6A 3'UTR//CDS       27773535
chr18:23619346-23619347(-) m6A 3'UTR//CDS       27773535
chr18:23619361-23619362(-) m6A 3'UTR//CDS       27773535
chr18:23632592-23632593(-) m6A 3'UTR//CDS//exon       27773535
chr18:23632615-23632616(-) m6A 3'UTR//CDS//exon       27773535
chr18:23632628-23632629(-) m6A 3'UTR//CDS//exon       27773535
chr18:23632642-23632643(-) m6A 3'UTR//CDS//exon       27773535
chr18:23632754-23632755(-) m6A 3'UTR//CDS//exon       27773535
chr18:23632777-23632778(-) m6A 3'UTR//CDS//exon       27773535
chr18:23632783-23632784(-) m6A 3'UTR//CDS//exon       27773535
chr18:23637575-23637576(-) m6A 3'UTR//CDS//exon       27773535
chr18:23648278-23648279(-) m6A exon//intron       27773535
chr18:23648496-23648497(-) m6A 3'UTR//exon//intron       27773535
chr18:23670560-23670561(-) m6A 5'UTR//exon//intron       24981863
chr18:23670709-23670710(-) m6A 5'UTR//intron       27773536
chr18:23671132-23671133(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SS18
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: SS18

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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