Detail Information

Basic Information:


  VIRBase ID:  

VHID00024044

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-3 RPS25
miRBase
Accession/Entrez ID		 zikv-mir-3 6230
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - S25

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RPS25
chr11:118886874(-) A-I      intronic
chr11:118887499(-) A-I      intronic
chr11:118886898(-) A-I      intronic
chr11:118886889(-) A-I      intronic
chr11:118886850(-) A-I      intronic
chr11:118887545(-) A-I      intronic
chr11:118886873(-) A-I      intronic
chr11:118887191(-) A-I      intronic
chr11:118887199(-) A-I      intronic
chr11:118887449(-) A-I      intronic
chr11:118887356(-) A-I      intronic
chr11:118887559(-) A-I      intronic
chr11:118886970(-) A-I      intronic
chr11:118886879(-) A-I      intronic
chr11:118887403(-) A-I      intronic
chr11:118886870(-) A-I      intronic
chr11:118886903(-) A-I      intronic
chr11:118886806(-) A-I      intronic
chr11:118887438(-) A-I      intronic
chr11:118886939(-) A-I      intronic
chr11:118887398(-) A-I      intronic
chr11:118887044(-) A-I      intronic
chr11:118886933(-) A-I      intronic
chr11:118887605(-) A-I      intronic
chr11:118886876(-) A-I      intronic
chr11:118886890(-) A-I      intronic
chr11:118886728(-) A-I      intronic
chr11:118886938(-) A-I      intronic
chr11:118887473(-) A-I      intronic
chr11:118886741(-) A-I      intronic
chr11:118886886(-) A-I      intronic
chr11:118887204(-) A-I      intronic
chr11:118887552(-) A-I      intronic
chr11:118886832(-) A-I      intronic
chr11:118887221(-) A-I      intronic
chr11:118886818(-) A-I      intronic
chr11:118887465(-) A-I      intronic
chr11:118887607(-) A-I      intronic
chr11:118887479(-) A-I      intronic
chr11:118887478(-) A-I      intronic
chr11:118887525(-) A-I      intronic
chr11:118887550(-) A-I      intronic
chr11:118887241(-) A-I      intronic
chr11:118887505(-) A-I      intronic
chr11:118887588(-) A-I      intronic
chr11:118887604(-) A-I      intronic
chr11:118887437(-) A-I      intronic
chr11:118886914(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RPS25
chr11:118886873(-) A-I intron -    22327324
chr11:118886876(-) A-I intron -    22327324
chr11:118886818(-) A-G intron -    22484847
chr11:118886873(-) A-G intron -    22484847
chr11:118886876(-) A-G intron -    22484847
chr11:118886879(-) A-G intron -    22484847
chr11:118887200(-) C-A intron -    22484847
chr11:118887465(-) A-G intron -    22484847
chr11:118887473(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RPS25
chr11:118886638-118886639(-) m6A 3'UTR//CDS//exon       -
chr11:118888126-118888127(-) m6A 3'UTR//CDS//exon       -
chr11:118888156-118888157(-) m6A 3'UTR//CDS//exon//intron       24981863
chr11:118888183-118888184(-) m6A 3'UTR//CDS//exon//intron       24981863
chr11:118888229-118888230(-) m6A 3'UTR//CDS//exon//intron       24981863
chr11:118888342-118888343(-) m6A exon//intron       24981863
chr11:118888640-118888641(-) m6A 3'UTR//exon//intron       24981863//27773535//22575960
chr11:118888655-118888656(-) m6A CDS//exon//intron       24981863//27773535//22575960
chr11:118888695-118888696(-) m6A CDS//exon       24981863//27773535//22575960
chr11:118888704-118888705(-) m6A CDS//exon       24981863//27773535//22575960
chr11:118888710-118888711(-) m6A CDS//exon       24981863//27773535//22575960
chr11:118888793-118888794(-) m6A exon//intron       27773535//22575960
chr11:118888812-118888813(-) m6A exon//intron       27773535
chr11:118889136-118889137(-) m6A 5'UTR//exon       27371828
chr11:118889194-118889195(-) m6A 5'UTR//exon       24284625//22608085
chr11:118889227-118889228(-) m6A 5'UTR//exon       24284625//24981863//22608085
chr11:118889260-118889261(-) m6A 5'UTR//exon       24981863//22608085
chr11:118889297-118889298(-) m6A 5'UTR//exon       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RPS25
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-3
Interactor2: RPS25

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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