Detail Information

Basic Information:


  VIRBase ID:  

VHID00017017

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-2 XAB2
miRBase
Accession/Entrez ID		 zikv-mir-2 56949
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - HCNP//HCRN//NTC90//SYF1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR XAB2
chr19:7693730(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase XAB2
chr19:7684475-7684476(-) m6A CDS//exon       25456834//24981863//27371828//27773536
chr19:7684577-7684578(-) m6A exon//intron       25456834//24981863//27371828//27773536
chr19:7684646-7684647(-) m6A CDS//exon       24209618//24981863//27371828//27773536//22575960
chr19:7684908-7684909(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960
chr19:7685273-7685274(-) m6A CDS//exon       27773536
chr19:7685300-7685301(-) m6A CDS//exon       27773536
chr19:7686214-7686215(-) m6A exon//intron       27773535
chr19:7686247-7686248(-) m6A exon//intron       27773535
chr19:7687675-7687676(-) m6A CDS//exon       -
chr19:7688137-7688138(-) m6A CDS//exon       27773536
chr19:7688677-7688678(-) m6A CDS//exon       27773536
chr19:7688758-7688759(-) m6A CDS//exon       24284625//27371828//27773536
chr19:7689216-7689217(-) m6A CDS//exon       24284625//27371828//27773536
chr19:7689281-7689282(-) m6A CDS//exon       24284625//27371828//27773536
chr19:7689300-7689301(-) m6A CDS//exon       24284625//27371828//27773536
chr19:7693100-7693101(-) m6A CDS//exon       27773535//27371828
chr19:7693143-7693144(-) m6A CDS//exon       25456834//24981863//27773535//27371828
chr19:7693173-7693174(-) m6A CDS       25456834//24981863//27773535//27371828
chr19:7694372-7694373(-) m6A CDS       24284625//25456834//24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate XAB2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-2
Interactor2: XAB2

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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