Detail Information

Basic Information:


  VIRBase ID:  

VHID00016719

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-2 LRRC40
miRBase
Accession/Entrez ID		 zikv-mir-2 55631
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - dJ677H15.1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LRRC40
chr1:70626806(-) A-I      intronic
chr1:70627148(-) A-I      intronic
chr1:70629908(-) A-I      intronic
chr1:70629964(-) A-I      intronic
chr1:70629967(-) A-I      intronic
chr1:70632126(-) A-I      intronic
chr1:70632186(-) A-I      intronic
chr1:70662067(-) A-I      intronic
chr1:70632228(-) A-I      intronic
chr1:70632231(-) A-I      intronic
chr1:70662084(-) A-I      intronic
chr1:70662085(-) A-I      intronic
chr1:70663138(-) A-I      intronic
chr1:70663518(-) A-I      intronic
chr1:70663519(-) A-I      intronic
chr1:70663583(-) A-I      intronic
chr1:70663597(-) A-I      intronic
chr1:70663641(-) A-I      intronic
chr1:70632257(-) A-I      intronic
chr1:70632998(-) A-I      intronic
chr1:70633051(-) A-I      intronic
chr1:70633118(-) A-I      intronic
chr1:70633475(-) A-I      intronic
chr1:70633486(-) A-I      intronic
chr1:70633501(-) A-I      intronic
chr1:70633525(-) A-I      intronic
chr1:70633573(-) A-I      intronic
chr1:70649374(-) A-I      intronic
chr1:70656161(-) A-I      intronic
chr1:70662014(-) A-I      intronic
chr1:70662030(-) A-I      intronic
chr1:70611935(-) A-I      intronic
chr1:70618823(-) A-I      intronic
chr1:70666739(-) A-I      intronic
chr1:70668609(-) A-I      intronic
chr1:70668775(-) A-I      intronic
chr1:70669129(-) A-I      intronic
chr1:70632304(-) A-I      intronic
chr1:70629043(-) A-I      intronic
chr1:70668864(-) A-I      intronic
chr1:70633060(-) A-I      intronic
chr1:70632986(-) A-I      intronic
chr1:70632309(-) A-I      intronic
chr1:70632197(-) A-I      intronic
chr1:70663724(-) A-I      intronic
chr1:70668712(-) A-I      intronic
chr1:70626896(-) A-I      intronic
chr1:70633026(-) A-I      intronic
chr1:70628950(-) A-I      intronic
chr1:70632254(-) A-I      intronic
chr1:70627172(-) A-I      intronic
chr1:70628999(-) A-I      intronic
chr1:70629005(-) A-I      intronic
chr1:70628973(-) A-I      intronic
chr1:70662150(-) A-I      intronic
chr1:70633196(-) A-I      intronic
chr1:70662202(-) A-I      intronic
chr1:70663711(-) A-I      intronic
chr1:70633499(-) A-I      intronic
chr1:70668706(-) A-I      intronic
chr1:70627123(-) A-I      intronic
chr1:70649359(-) A-I      intronic
chr1:70663663(-) A-I      intronic
chr1:70663709(-) A-I      intronic
chr1:70630034(-) A-I      intronic
chr1:70665964(-) A-I      intronic
chr1:70633365(-) A-I      intronic
chr1:70628882(-) A-I      intronic
chr1:70633497(-) A-I      intronic
chr1:70633426(-) A-I      intronic
chr1:70632232(-) A-I      intronic
chr1:70663645(-) A-I      intronic
chr1:70633571(-) A-I      intronic
chr1:70627194(-) A-I      intronic
chr1:70629042(-) A-I      intronic
chr1:70628887(-) A-I      intronic
chr1:70649469(-) A-I      intronic
chr1:70632258(-) A-I      intronic
chr1:70633124(-) A-I      intronic
chr1:70633570(-) A-I      intronic
chr1:70649356(-) A-I      intronic
chr1:70633397(-) A-I      intronic
chr1:70649396(-) A-I      intronic
chr1:70627178(-) A-I      intronic
chr1:70630026(-) A-I      intronic
chr1:70649492(-) A-I      intronic
chr1:70663664(-) A-I      intronic
chr1:70656249(-) A-I      intronic
chr1:70633191(-) A-I      intronic
chr1:70668733(-) A-I      intronic
chr1:70633436(-) A-I      intronic
chr1:70633086(-) A-I      intronic
chr1:70632124(-) A-I      intronic
chr1:70649849(-) A-I      intronic
chr1:70627185(-) A-I      intronic
chr1:70632099(-) A-I      intronic
chr1:70628965(-) A-I      intronic
chr1:70627151(-) A-I      intronic
chr1:70632224(-) A-I      intronic
chr1:70626828(-) A-I      intronic
chr1:70662151(-) A-I      intronic
chr1:70633394(-) A-I      intronic
chr1:70649850(-) A-I      intronic
chr1:70649523(-) A-I      intronic
chr1:70611890(-) A-I      intronic
chr1:70626836(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LRRC40
chr1:70624905(-) T-C intron -    22484847
chr1:70627151(-) A-G intron -    22484847
chr1:70628882(-) A-G intron -    22484847
chr1:70628887(-) A-G intron -    22484847
chr1:70630026(-) A-G intron -    22484847
chr1:70630034(-) A-G intron -    22484847
chr1:70632124(-) A-G intron -    22484847
chr1:70632197(-) A-G intron -    22484847
chr1:70632224(-) A-G intron -    22484847
chr1:70632232(-) A-G intron -    22484847
chr1:70632254(-) A-G intron -    22484847
chr1:70632258(-) A-G intron -    22484847
chr1:70632986(-) A-G intron -    22484847
chr1:70633026(-) A-G intron -    22484847
chr1:70633060(-) A-G intron -    22484847
chr1:70633086(-) A-G intron -    22484847
chr1:70633124(-) A-G intron -    22484847
chr1:70633191(-) A-G intron -    22484847
chr1:70633397(-) A-G intron -    22484847
chr1:70633436(-) A-G intron -    22484847
chr1:70633497(-) A-G intron -    22484847
chr1:70633499(-) A-G intron -    22484847
chr1:70633570(-) A-G intron -    22484847
chr1:70633571(-) A-G intron -    22484847
chr1:70649396(-) A-G intron -    22484847
chr1:70649523(-) A-G intron -    22484847
chr1:70649849(-) A-G intron -    22484847
chr1:70649850(-) A-G intron -    22484847
chr1:70662150(-) A-G intron -    22484847
chr1:70662151(-) A-G intron -    22484847
chr1:70662202(-) A-G intron -    22484847
chr1:70663645(-) A-G intron -    22484847
chr1:70663711(-) A-G intron -    22484847
chr1:70665964(-) A-G intron -    22484847
chr1:70668706(-) A-G intron -    22484847
chr1:70668712(-) A-G intron -    22484847
chr1:70668864(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LRRC40
chr1:70610893-70610894(-) m6A 3'UTR       27773535
chr1:70610915-70610916(-) m6A 3'UTR       27773535
chr1:70610954-70610955(-) m6A 3'UTR       27773535
chr1:70621472-70621473(-) m6A CDS       27773535
chr1:70625018-70625019(-) m6A CDS       27773535
chr1:70625085-70625086(-) m6A CDS       27773535
chr1:70625113-70625114(-) m6A CDS       24981863//27773535
chr1:70671083-70671084(-) m6A CDS       27773535
chr1:70671098-70671099(-) m6A CDS       27773535
chr1:70671122-70671123(-) Cm CDS       -
chr1:70671158-70671159(-) m6A CDS       24209618//24981863//27773535//27371828//22608085
chr1:70671224-70671225(-) m6A 5'UTR       24209618//25456834//24981863//27371828//22608085
chr1:70671231-70671232(-) m6A 5'UTR       24209618//25456834//24981863//27371828//22608085
chr1:70671238-70671239(-) m6A 5'UTR       24209618//25456834//24981863//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LRRC40
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-2
Interactor2: LRRC40

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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