Detail Information

Basic Information:


  VIRBase ID:  

VHID00015234

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-2 SF3B1
miRBase
Accession/Entrez ID		 zikv-mir-2 23451
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - Hsh155//MDS//PRP10//PRPF10//SAP155//SF3b155

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SF3B1
chr2:198275335(-) A-I      intronic
chr2:198275354(-) A-I      intronic
chr2:198295953(-) A-I      intronic
chr2:198275368(-) A-I      intronic
chr2:198279600(-) A-I      intronic
chr2:198280044(-) A-I      intronic
chr2:198275374(-) A-I      intronic
chr2:198295931(-) A-I      intronic
chr2:198280073(-) A-I      intronic
chr2:198280079(-) A-I      intronic
chr2:198280088(-) A-I      intronic
chr2:198295974(-) A-I      intronic
chr2:198277254(-) A-I      intronic
chr2:198277256(-) A-I      intronic
chr2:198277537(-) A-I      intronic
chr2:198277546(-) A-I      intronic
chr2:198277566(-) A-I      intronic
chr2:198277618(-) A-I      intronic
chr2:198278043(-) A-I      intronic
chr2:198278049(-) A-I      intronic
chr2:198278642(-) A-I      intronic
chr2:198278751(-) A-I      intronic
chr2:198278783(-) A-I      intronic
chr2:198278805(-) A-I      intronic
chr2:198279484(-) A-I      intronic
chr2:198279485(-) A-I      intronic
chr2:198279526(-) A-I      intronic
chr2:198279546(-) A-I      intronic
chr2:198279549(-) A-I      intronic
chr2:198279580(-) A-I      intronic
chr2:198279609(-) A-I      intronic
chr2:198279627(-) A-I      intronic
chr2:198279992(-) A-I      intronic
chr2:198280012(-) A-I      intronic
chr2:198280183(-) A-I      intronic
chr2:198280184(-) A-I      intronic
chr2:198280198(-) A-I      intronic
chr2:198280555(-) A-I      intronic
chr2:198280558(-) A-I      intronic
chr2:198280809(-) A-I      intronic
chr2:198294291(-) A-I      intronic
chr2:198294386(-) A-I      intronic
chr2:198295289(-) A-I      intronic
chr2:198295459(-) A-I      intronic
chr2:198295469(-) A-I      intronic
chr2:198295576(-) A-I      intronic
chr2:198295939(-) A-I      intronic
chr2:198296123(-) A-I      intronic
chr2:198297377(-) A-I      intronic
chr2:198297426(-) A-I      intronic
chr2:198297514(-) A-I      intronic
chr2:198297606(-) A-I      intronic
chr2:198277691(-) A-I      intronic
chr2:198258370(-) A-I      intronic
chr2:198258237(-) A-I      intronic
chr2:198258244(-) A-I      intronic
chr2:198258245(-) A-I      intronic
chr2:198258301(-) A-I      intronic
chr2:198258305(-) A-I      intronic
chr2:198258314(-) A-I      intronic
chr2:198258321(-) A-I      intronic
chr2:198258763(-) A-I      intronic
chr2:198258808(-) A-I      intronic
chr2:198259373(-) A-I      intronic
chr2:198259607(-) A-I      intronic
chr2:198274121(-) A-I      intronic
chr2:198275378(-) A-I      intronic
chr2:198275500(-) A-I      intronic
chr2:198276268(-) A-I      intronic
chr2:198276274(-) A-I      intronic
chr2:198276284(-) A-I      intronic
chr2:198276712(-) A-I      intronic
chr2:198277176(-) A-I      intronic
chr2:198277208(-) A-I      intronic
chr2:198277217(-) A-I      intronic
chr2:198277244(-) A-I      intronic
chr2:198297552(-) A-I      intronic
chr2:198258371(-) A-I      intronic
chr2:198259567(-) A-I      intronic
chr2:198259547(-) A-I      intronic
chr2:198294502(-) A-I      intronic
chr2:198258796(-) A-I      intronic
chr2:198259404(-) A-I      intronic
chr2:198258742(-) A-I      intronic
chr2:198280179(-) A-I      intronic
chr2:198275479(-) A-I      intronic
chr2:198259385(-) A-I      intronic
chr2:198280039(-) A-I      intronic
chr2:198258273(-) A-I      intronic
chr2:198258663(-) A-I      intronic
chr2:198278078(-) A-I      intronic
chr2:198259585(-) A-I      intronic
chr2:198258274(-) A-I      intronic
chr2:198278713(-) A-I      intronic
chr2:198296844(-) A-I      intronic
chr2:198258378(-) A-I      intronic
chr2:198258337(-) A-I      intronic
chr2:198275433(-) A-I      intronic
chr2:198258447(-) A-I      intronic
chr2:198258341(-) A-I      intronic
chr2:198277284(-) A-I      intronic
chr2:198297543(-) A-I      intronic
chr2:198258207(-) A-I      intronic
chr2:198259461(-) A-I      intronic
chr2:198296599(-) A-I      intronic
chr2:198277625(-) A-I      intronic
chr2:198279559(-) A-I      intronic
chr2:198258657(-) A-I      intronic
chr2:198258206(-) A-I      intronic
chr2:198275838(-) A-I      intronic
chr2:198278025(-) A-I      intronic
chr2:198278607(-) A-I      intronic
chr2:198296119(-) A-I      intronic
chr2:198258760(-) A-I      intronic
chr2:198278804(-) A-I      intronic
chr2:198296116(-) A-I      intronic
chr2:198277452(-) A-I      intronic
chr2:198296846(-) A-I      intronic
chr2:198259546(-) A-I      intronic
chr2:198280250(-) A-I      intronic
chr2:198297507(-) A-I      intronic
chr2:198277465(-) A-I      intronic
chr2:198274174(-) A-I      intronic
chr2:198297331(-) A-I      intronic
chr2:198259024(-) A-I      intronic
chr2:198278750(-) A-I      intronic
chr2:198278707(-) A-I      intronic
chr2:198277693(-) A-I      intronic
chr2:198295934(-) A-I      intronic
chr2:198297475(-) A-I      intronic
chr2:198295316(-) A-I      intronic
chr2:198277589(-) A-I      intronic
chr2:198277579(-) A-I      intronic
chr2:198276382(-) A-I      intronic
chr2:198259521(-) A-I      intronic
chr2:198277505(-) A-I      intronic
chr2:198287530(-) A-I      intronic
chr2:198276233(-) A-I      intronic
chr2:198276208(-) A-I      intronic
chr2:198277907(-) A-I      intronic
chr2:198279714(-) A-I      intronic
chr2:198259000(-) A-I      intronic
chr2:198278627(-) A-I      intronic
chr2:198275786(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SF3B1
chr2:198279606(-) A-I intron -    21960545
chr2:198258206(-) A-G intron -    22484847
chr2:198258207(-) A-G intron -    22484847
chr2:198258273(-) A-G intron -    22484847
chr2:198258274(-) A-G intron -    22484847
chr2:198258337(-) A-G intron -    22484847
chr2:198258341(-) A-G intron -    22484847
chr2:198258378(-) A-G intron -    22484847
chr2:198258447(-) A-G intron -    22484847
chr2:198258448(-) A-G intron -    22484847
chr2:198258470(-) A-G intron -    22484847
chr2:198258642(-) A-G intron -    22484847
chr2:198258796(-) A-G intron -    22484847
chr2:198258895(-) A-G intron -    22484847
chr2:198259385(-) A-G intron -    22484847
chr2:198259440(-) A-G intron -    22484847
chr2:198259520(-) A-G intron -    22484847
chr2:198259521(-) A-G intron -    22484847
chr2:198259546(-) A-G intron -    22484847
chr2:198259567(-) A-G intron -    22484847
chr2:198259585(-) A-G intron -    22484847
chr2:198275479(-) A-G intron -    22484847
chr2:198276208(-) A-G intron -    22484847
chr2:198276382(-) A-G intron -    22484847
chr2:198276407(-) C-T intron -    22484847
chr2:198277284(-) A-G intron -    22484847
chr2:198277353(-) A-G intron -    22484847
chr2:198277589(-) A-G intron -    22484847
chr2:198277693(-) A-G intron -    22484847
chr2:198277907(-) A-G intron -    22484847
chr2:198278025(-) A-G intron -    22484847
chr2:198278627(-) A-G intron -    22484847
chr2:198278668(-) A-G intron -    22484847
chr2:198278707(-) A-G intron -    22484847
chr2:198278713(-) A-G intron -    22484847
chr2:198278804(-) A-G intron -    22484847
chr2:198279494(-) A-G intron -    22484847
chr2:198279559(-) A-G intron -    22484847
chr2:198279606(-) A-G intron -    22484847
chr2:198279644(-) A-G intron -    22484847
chr2:198279714(-) A-G intron -    22484847
chr2:198280039(-) A-G intron -    22484847
chr2:198280179(-) A-G intron -    22484847
chr2:198280250(-) A-G intron -    22484847
chr2:198295934(-) A-G intron -    22484847
chr2:198297331(-) A-G intron -    22484847
chr2:198297507(-) A-G intron -    22484847
chr2:198297552(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SF3B1
chr2:198256853-198256854(-) m6A 3'UTR       26404942
chr2:198256918-198256919(-) Tm 3'UTR       -
chr2:198256926-198256927(-) m6A 3'UTR       26404942
chr2:198256946-198256947(-) m6A 3'UTR       26404942
chr2:198256954-198256955(-) m6A 3'UTR       26404942
chr2:198256978-198256979(-) m6A 3'UTR//exon       26404942
chr2:198257044-198257045(-) m6A CDS//exon       26404942
chr2:198257063-198257064(-) m6A CDS//exon       26404942
chr2:198257787-198257788(-) m6A CDS//exon       22575960
chr2:198257813-198257814(-) m6A CDS//exon       26404942//22575960
chr2:198257896-198257897(-) m6A CDS//exon       22575960
chr2:198257909-198257910(-) m6A CDS//exon       22575960
chr2:198260921-198260922(-) Y CDS       26075521
chr2:198263241-198263242(-) m6A CDS//exon       26404942
chr2:198263261-198263262(-) m6A CDS//exon       24981863//26404942
chr2:198263354-198263355(-) m6A exon//intron       24981863
chr2:198263722-198263723(-) m6A CDS//intron       24981863
chr2:198264875-198264876(-) m6A CDS       24981863
chr2:198265450-198265451(-) m6A CDS       26404942//27773535
chr2:198265486-198265487(-) m6A CDS       24981863//27773535//22575960
chr2:198265495-198265496(-) m6A CDS       24981863//27773535//22575960
chr2:198265545-198265546(-) m6A CDS       24981863//27773535//22575960
chr2:198265570-198265571(-) m6A CDS       24981863//27773535//22575960
chr2:198265631-198265632(-) m6A CDS       24981863//27773535//22575960
chr2:198266171-198266172(-) m6A CDS       27773535
chr2:198266197-198266198(-) m6A CDS       27773535
chr2:198272817-198272818(-) m6A CDS//exon       26404942//22575960
chr2:198273112-198273113(-) m6A CDS//exon       26404942//22575960
chr2:198273137-198273138(-) m6A CDS//exon       22575960
chr2:198273188-198273189(-) m6A CDS//exon       27773535//22575960
chr2:198273233-198273234(-) m6A CDS//exon       24981863//27773535//22575960
chr2:198273262-198273263(-) Cm CDS//exon       -
chr2:198273263-198273264(-) m6A CDS//exon       24981863//27773535//22575960
chr2:198273272-198273273(-) m6A CDS//exon       24981863//27773535//22575960
chr2:198273397-198273398(-) m6A exon//intron       22575960
chr2:198274502-198274503(-) m6A CDS       27773535//22575960
chr2:198274511-198274512(-) m6A CDS//exon       27773535//22575960
chr2:198274525-198274526(-) m6A CDS//exon       27773535//22575960
chr2:198274667-198274668(-) m6A CDS//exon       24981863//27773535//27371828//22575960
chr2:198274694-198274695(-) m6A CDS//exon       24981863//27773535//27371828//22575960
chr2:198281346-198281347(-) m6A exon//intron       24981863//27773535//27371828//22575960
chr2:198281353-198281354(-) m6A exon//intron       24981863//27773535//27371828//22575960
chr2:198281367-198281368(-) m6A exon//intron       24981863//27773535//27371828//22575960
chr2:198281409-198281410(-) m6A exon//intron       24981863//27773535//27371828//22575960
chr2:198281488-198281489(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828//27773536//22575960
chr2:198281511-198281512(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828//27773536//22575960
chr2:198281523-198281524(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828//22575960
chr2:198281590-198281591(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828
chr2:198283253-198283254(-) m6A 3'UTR//CDS//exon       24981863//28052920//27773535//27371828
chr2:198283276-198283277(-) m6A 3'UTR//CDS//exon       24981863//28052920//27773535
chr2:198283303-198283304(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr2:198283367-198283368(-) m6A exon//intron       24981863//27773535
chr2:198285193-198285194(-) m6A 3'UTR//CDS       24981863//27773535
chr2:198285225-198285226(-) m6A 3'UTR//CDS       24981863//27773535
chr2:198285242-198285243(-) m6A 3'UTR//CDS       27773535
chr2:198285755-198285756(-) m6A 3'UTR//CDS       27773535
chr2:198288540-198288541(-) m6A CDS//intron       26404942
chr2:198299697-198299698(-) Am CDS       -
chr2:198299704-198299705(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22608085
chr2:198299727-198299728(-) m6A 5'UTR       24284625//24981863//26404942//27773535//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SF3B1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-2
Interactor2: SF3B1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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