Detail Information

Basic Information:


  VIRBase ID:  

VHID00012040

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-2 NDUFB2
miRBase
Accession/Entrez ID		 zikv-mir-2 4708
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - AGGG//CI-AGGG

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NDUFB2
chr7:140405915(+) A-I      intronic
chr7:140403754(+) A-I      intronic
chr7:140401334(+) A-I      intronic
chr7:140401304(+) A-I      intronic
chr7:140400500(+) A-I      intronic
chr7:140400405(+) A-I      intronic
chr7:140397734(+) A-I      intronic
chr7:140400431(+) A-I      intronic
chr7:140400478(+) A-I      intronic
chr7:140400097(+) A-I      intronic
chr7:140400079(+) A-I      intronic
chr7:140400024(+) A-I      intronic
chr7:140397709(+) A-I      intronic
chr7:140406078(+) A-I      intronic
chr7:140406043(+) A-I      intronic
chr7:140400474(+) A-I      intronic
chr7:140405917(+) A-I      intronic
chr7:140400333(+) A-I      intronic
chr7:140400433(+) A-I      intronic
chr7:140401523(+) A-I      intronic
chr7:140397651(+) A-I      intronic
chr7:140406052(+) A-I      intronic
chr7:140401269(+) A-I      intronic
chr7:140398899(+) A-I      intronic
chr7:140400103(+) A-I      intronic
chr7:140398908(+) A-I      intronic
chr7:140400063(+) A-I      intronic
chr7:140400429(+) A-I      intronic
chr7:140401615(+) A-I      intronic
chr7:140400053(+) A-I      intronic
chr7:140400439(+) A-I      intronic
chr7:140400186(+) A-I      intronic
chr7:140397774(+) A-I      intronic
chr7:140406068(+) A-I      intronic
chr7:140400430(+) A-I      intronic
chr7:140401390(+) A-I      intronic
chr7:140400458(+) A-I      intronic
chr7:140401405(+) A-I      intronic
chr7:140400152(+) A-I      intronic
chr7:140401677(+) A-I      5'UTR
chr7:140401657(+) A-I      5'UTR
chr7:140400023(+) A-I      intronic
chr7:140400510(+) A-I      intronic
chr7:140400537(+) A-I      intronic
chr7:140400073(+) A-I      intronic
chr7:140400374(+) A-I      intronic
chr7:140406150(+) A-I      intronic
chr7:140400090(+) A-I      intronic
chr7:140399980(+) A-I      intronic
chr7:140400085(+) A-I      intronic
chr7:140400379(+) A-I      intronic
chr7:140397721(+) A-I      intronic
chr7:140400540(+) A-I      intronic
chr7:140406020(+) A-I      intronic
chr7:140400145(+) A-I      intronic
chr7:140401579(+) A-I      intronic
chr7:140398854(+) A-I      intronic
chr7:140400355(+) A-I      intronic
chr7:140397735(+) A-I      intronic
chr7:140397704(+) A-I      intronic
chr7:140399946(+) A-I      intronic
chr7:140400001(+) A-I      intronic
chr7:140400469(+) A-I      intronic
chr7:140401277(+) A-I      intronic
chr7:140401270(+) A-I      intronic
chr7:140400205(+) A-I      intronic
chr7:140401353(+) A-I      intronic
chr7:140399949(+) A-I      intronic
chr7:140400442(+) A-I      intronic
chr7:140418230(+) A-I      intronic
chr7:140397714(+) A-I      intronic
chr7:140401264(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NDUFB2
chr7:140397666(+) A-I intron -    22327324
chr7:140397654(+) A-G intron -    22484847
chr7:140397666(+) A-G intron -    22484847
chr7:140397735(+) A-G intron -    22484847
chr7:140397737(+) T-C intron -    22484847
chr7:140398854(+) A-G intron -    22484847
chr7:140399946(+) A-G intron -    22484847
chr7:140399949(+) A-G intron -    22484847
chr7:140399980(+) A-G intron -    22484847
chr7:140399996(+) T-C intron -    22484847
chr7:140400001(+) A-G intron -    22484847
chr7:140400023(+) A-G intron -    22484847
chr7:140400048(+) T-C intron -    22484847
chr7:140400053(+) A-G intron -    22484847
chr7:140400061(+) T-C intron -    22484847
chr7:140400073(+) A-G intron -    22484847
chr7:140400085(+) A-G intron -    22484847
chr7:140400090(+) A-G intron -    22484847
chr7:140400101(+) T-C intron -    22484847
chr7:140400152(+) A-G intron -    22484847
chr7:140400331(+) A-G intron -    22484847
chr7:140400374(+) A-G intron -    22484847
chr7:140400442(+) A-G intron -    22484847
chr7:140400458(+) A-G intron -    22484847
chr7:140400468(+) A-G intron -    22484847
chr7:140400469(+) A-G intron -    22484847
chr7:140400509(+) A-G intron -    22484847
chr7:140400510(+) A-G intron -    22484847
chr7:140400529(+) A-G intron -    22484847
chr7:140400537(+) A-G intron -    22484847
chr7:140400538(+) A-G intron -    22484847
chr7:140400542(+) T-C intron -    22484847
chr7:140401390(+) A-G intron -    22484847
chr7:140401523(+) A-G intron -    22484847
chr7:140405012(+) T-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NDUFB2
chr7:140394693-140394694(+) m6A intron       24284625//24981863//22608085
chr7:140394850-140394851(+) m6A intron       24981863//22608085
chr7:140395625-140395626(+) m6A intron       24284625//25456834//24981863//27773535//22608085
chr7:140395688-140395689(+) m6A intron       24284625//25456834//24981863//27773535//22608085
chr7:140395767-140395768(+) m6A 5'UTR       24981863//27773535
chr7:140395837-140395838(+) m6A intron       24284625//24981863//27773535//22608085
chr7:140395892-140395893(+) m6A intron       27773535
chr7:140396520-140396521(+) m6A 5'UTR//exon//intron       25456834//24981863//27773535
chr7:140396595-140396596(+) Y 5'UTR//CDS//exon//intron       26075521
chr7:140396616-140396617(+) m6A CDS//exon//intron       25456834//24981863
chr7:140396623-140396624(+) Gm CDS//exon//intron       -
chr7:140396804-140396805(+) m6A 5'UTR//intron       25456834//22575960
chr7:140396832-140396833(+) m6A 5'UTR//intron       -
chr7:140396851-140396852(+) m6A 5'UTR//intron       -
chr7:140397994-140397995(+) m6A 3'UTR//intron       -
chr7:140404692-140404693(+) m6A 3'UTR//CDS//exon//intron       27773535
chr7:140404729-140404730(+) m6A 3'UTR//CDS//exon//intron       27773535
chr7:140404742-140404743(+) m6A 3'UTR//exon//intron       27773535
chr7:140404811-140404812(+) m6A 3'UTR//intron       27773535
chr7:140404841-140404842(+) m6A 3'UTR//intron       27773535
chr7:140404851-140404852(+) m6A 3'UTR//intron       27773535
chr7:140421658-140421659(+) m6A 3'UTR       22608085
chr7:140421723-140421724(+) m6A 3'UTR       24981863//22608085
chr7:140421766-140421767(+) m6A 3'UTR       24981863
chr7:140421775-140421776(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NDUFB2
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-2
Interactor2: NDUFB2

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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