Detail Information

Basic Information:


  VIRBase ID:  

VHID00011474

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-2 HNRNPAB
miRBase
Accession/Entrez ID		 zikv-mir-2 3182
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - ABBP1//HNRPAB

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HNRNPAB
chr5:177631610-177631611(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr5:177631886-177631887(+) Gm CDS       -
chr5:177631894-177631895(+) m6A CDS       24209618//27773536//22575960
chr5:177632732-177632733(+) m6A exon//intron       24209618
chr5:177632751-177632752(+) m6A exon//intron       24209618//24981863
chr5:177632762-177632763(+) m6A exon//intron       24209618//24981863
chr5:177632808-177632809(+) m6A exon//intron       24209618//24981863
chr5:177632895-177632896(+) m6A CDS//exon       24209618//24981863//27773535
chr5:177633739-177633740(+) m6A CDS//exon       24209618//27773535//22575960
chr5:177633801-177633802(+) m1A CDS//exon       26863196
chr5:177633805-177633806(+) m6A CDS//exon       24209618//27773535//22575960
chr5:177634131-177634132(+) m6A CDS       24209618//27773535//22575960
chr5:177634174-177634175(+) m6A CDS       24209618//27773535//22575960
chr5:177636400-177636401(+) m6A CDS       24209618//26404942//27773535//22575960
chr5:177636415-177636416(+) m6A CDS       24209618//26404942//27773535//22575960
chr5:177637174-177637175(+) m6A CDS//intron       24209618//27773535//22575960
chr5:177637568-177637569(+) m6A CDS       26404942//22575960
chr5:177637960-177637961(+) m6A 3'UTR       27773535
chr5:177638156-177638157(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HNRNPAB
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-2
Interactor2: HNRNPAB

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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