Detail Information

Basic Information:


  VIRBase ID:  

VHID00008765

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 ARL13B
miRBase
Accession/Entrez ID		 zikv-mir-1 200894
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - ARL2L1//JBTS8

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ARL13B
chr3:93744993(+) A-I      intronic
chr3:93745029(+) A-I      intronic
chr3:93745045(+) A-I      intronic
chr3:93745048(+) A-I      intronic
chr3:93749102(+) A-I      intronic
chr3:93749110(+) A-I      intronic
chr3:93749151(+) A-I      intronic
chr3:93749170(+) A-I      intronic
chr3:93749181(+) A-I      intronic
chr3:93749188(+) A-I      intronic
chr3:93749279(+) A-I      intronic
chr3:93749288(+) A-I      intronic
chr3:93705558(+) A-I      intronic
chr3:93700494(+) A-I      intronic
chr3:93703050(+) A-I      intronic
chr3:93744981(+) A-I      intronic
chr3:93705660(+) A-I      intronic
chr3:93705662(+) A-I      intronic
chr3:93705664(+) A-I      intronic
chr3:93706075(+) A-I      intronic
chr3:93706593(+) A-I      intronic
chr3:93706699(+) A-I      intronic
chr3:93706710(+) A-I      intronic
chr3:93706737(+) A-I      intronic
chr3:93710412(+) A-I      intronic
chr3:93718186(+) A-I      intronic
chr3:93724968(+) A-I      intronic
chr3:93732692(+) A-I      intronic
chr3:93741047(+) A-I      intronic
chr3:93743461(+) A-I      intronic
chr3:93743466(+) A-I      intronic
chr3:93743483(+) A-I      intronic
chr3:93743547(+) A-I      intronic
chr3:93749289(+) A-I      intronic
chr3:93749749(+) A-I      intronic
chr3:93749830(+) A-I      intronic
chr3:93749834(+) A-I      intronic
chr3:93753934(+) A-I      intronic
chr3:93753960(+) A-I      intronic
chr3:93700530(+) A-I      intronic
chr3:93700539(+) A-I      intronic
chr3:93767535(+) A-I      intronic
chr3:93767536(+) A-I      intronic
chr3:93767553(+) A-I      intronic
chr3:93767565(+) A-I      intronic
chr3:93700476(+) A-I      intronic
chr3:93700470(+) A-I      intronic
chr3:93710348(+) A-I      intronic
chr3:93754038(+) A-I      intronic
chr3:93710319(+) A-I      intronic
chr3:93749915(+) A-I      intronic
chr3:93706629(+) A-I      intronic
chr3:93757534(+) A-I      intronic
chr3:93712368(+) A-I      intronic
chr3:93749766(+) A-I      intronic
chr3:93705617(+) A-I      intronic
chr3:93706623(+) A-I      intronic
chr3:93703837(+) A-I      intronic
chr3:93716812(+) A-I      intronic
chr3:93749899(+) A-I      intronic
chr3:93749345(+) A-I      intronic
chr3:93705703(+) A-I      intronic
chr3:93706605(+) A-I      intronic
chr3:93705557(+) A-I      intronic
chr3:93753824(+) A-I      intronic
chr3:93706039(+) A-I      intronic
chr3:93749955(+) A-I      intronic
chr3:93706515(+) A-I      intronic
chr3:93757461(+) A-I      intronic
chr3:93705629(+) A-I      intronic
chr3:93706680(+) A-I      intronic
chr3:93706619(+) A-I      intronic
chr3:93749210(+) A-I      intronic
chr3:93757497(+) A-I      intronic
chr3:93700607(+) A-I      intronic
chr3:93700471(+) A-I      intronic
chr3:93749778(+) A-I      intronic
chr3:93716800(+) A-I      intronic
chr3:93764644(+) A-I      intronic
chr3:93764590(+) A-I      intronic
chr3:93700602(+) A-I      intronic
chr3:93753904(+) A-I      intronic
chr3:93703780(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ARL13B
chr3:93722690-93722691(+) m6A 3'UTR//CDS//exon//intron       24981863
chr3:93722719-93722720(+) m6A 3'UTR//CDS//exon//intron       24981863
chr3:93754186-93754187(+) m6A 3'UTR//CDS//exon//intron       24981863
chr3:93755486-93755487(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:93755521-93755522(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:93755547-93755548(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:93755556-93755557(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:93758726-93758727(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:93758735-93758736(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:93758750-93758751(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr3:93758760-93758761(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93758782-93758783(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93758789-93758790(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93761869-93761870(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93761889-93761890(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93761907-93761908(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93761929-93761930(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93761957-93761958(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93762004-93762005(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93762059-93762060(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93762063-93762064(+) m6A 3'UTR//CDS       24981863
chr3:93768266-93768267(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93768274-93768275(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93768291-93768292(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93768304-93768305(+) m6A 3'UTR//CDS       24981863//27773535//22608085
chr3:93769678-93769679(+) m6A 3'UTR//CDS       24981863//27773535
chr3:93769695-93769696(+) m6A 3'UTR//CDS       24981863//27773535
chr3:93769704-93769705(+) m6A 3'UTR//CDS       24981863
chr3:93769723-93769724(+) m6A 3'UTR//CDS       24284625//24981863
chr3:93772107-93772108(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr3:93772148-93772149(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr3:93772154-93772155(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr3:93772179-93772180(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr3:93772248-93772249(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr3:93772335-93772336(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr3:93772406-93772407(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr3:93772428-93772429(+) m6A 3'UTR       24284625//24981863//22608085
chr3:93772515-93772516(+) m6A 3'UTR       24284625//24981863//22608085
chr3:93772546-93772547(+) m6A 3'UTR       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ARL13B
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: ARL13B

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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