Detail Information

Basic Information:


  VIRBase ID:  

VHID00007768

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 DTD1
miRBase
Accession/Entrez ID		 zikv-mir-1 92675
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - C20orf88//DTD//DUE-B//DUEB//HARS2//pqn-68

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DTD1
chr20:18611145(+) A-I      ncRNA
chr20:18724243(+) A-I      intronic
chr20:18677299(+) A-I      intronic
chr20:18633918(+) A-I      intronic
chr20:18633909(+) A-I      intronic
chr20:18724259(+) A-I      intronic
chr20:18611156(+) A-I      ncRNA
chr20:18633917(+) A-I      intronic
chr20:18724201(+) A-I      intronic
chr20:18724239(+) A-I      intronic
chr20:18611282(+) A-I      ncRNA
chr20:18677356(+) A-I      intronic
chr20:18677344(+) A-I      intronic
chr20:18632029(+) A-I      intronic
chr20:18611084(+) A-I      ncRNA
chr20:18724264(+) A-I      intronic
chr20:18602545(+) A-I      intronic
chr20:18571337(+) A-I      intronic
chr20:18571352(+) A-I      intronic
chr20:18581930(+) A-I      intronic
chr20:18587923(+) A-I      intronic
chr20:18599092(+) A-I      intronic
chr20:18599102(+) A-I      intronic
chr20:18629542(+) A-I      intronic
chr20:18602546(+) A-I      intronic
chr20:18602548(+) A-I      intronic
chr20:18602491(+) A-I      intronic
chr20:18629455(+) A-I      intronic
chr20:18602521(+) A-I      intronic
chr20:18602542(+) A-I      intronic
chr20:18677340(+) A-I      intronic
chr20:18629552(+) A-I      intronic
chr20:18630673(+) A-I      intronic
chr20:18630766(+) A-I      intronic
chr20:18631846(+) A-I      intronic
chr20:18631849(+) A-I      intronic
chr20:18631896(+) A-I      intronic
chr20:18569813(+) A-I      intronic
chr20:18631943(+) A-I      intronic
chr20:18642609(+) A-I      intronic
chr20:18631976(+) A-I      intronic
chr20:18632057(+) A-I      intronic
chr20:18633836(+) A-I      intronic
chr20:18633915(+) A-I      intronic
chr20:18640835(+) A-I      intronic
chr20:18642064(+) A-I      intronic
chr20:18677260(+) A-I      intronic
chr20:18642634(+) A-I      intronic
chr20:18642668(+) A-I      intronic
chr20:18642698(+) A-I      intronic
chr20:18674046(+) A-I      intronic
chr20:18674154(+) A-I      intronic
chr20:18674181(+) A-I      intronic
chr20:18581983(+) A-I      intronic
chr20:18677263(+) A-I      intronic
chr20:18631925(+) A-I      intronic
chr20:18677460(+) A-I      intronic
chr20:18677755(+) A-I      intronic
chr20:18677821(+) A-I      intronic
chr20:18587872(+) A-I      intronic
chr20:18587906(+) A-I      intronic
chr20:18587918(+) A-I      intronic
chr20:18677328(+) A-I      intronic
chr20:18640887(+) A-I      intronic
chr20:18629493(+) A-I      intronic
chr20:18732201(+) A-I      intronic
chr20:18570922(+) A-I      intronic
chr20:18677324(+) A-I      intronic
chr20:18630112(+) A-I      intronic
chr20:18641005(+) A-I      intronic
chr20:18640645(+) A-I      intronic
chr20:18641016(+) A-I      intronic
chr20:18632056(+) A-I      intronic
chr20:18581866(+) A-I      intronic
chr20:18724136(+) A-I      intronic
chr20:18642145(+) A-I      intronic
chr20:18581987(+) A-I      intronic
chr20:18677303(+) A-I      intronic
chr20:18597174(+) A-I      intronic
chr20:18640735(+) A-I      intronic
chr20:18724197(+) A-I      intronic
chr20:18570902(+) A-I      intronic
chr20:18597330(+) A-I      intronic
chr20:18582009(+) A-I      intronic
chr20:18642631(+) A-I      intronic
chr20:18629477(+) A-I      intronic
chr20:18642586(+) A-I      intronic
chr20:18677325(+) A-I      intronic
chr20:18722604(+) A-I      intronic
chr20:18610199(+) A-I      intronic
chr20:18640761(+) A-I      intronic
chr20:18587907(+) A-I      intronic
chr20:18630628(+) A-I      intronic
chr20:18641103(+) A-I      intronic
chr20:18573413(+) A-I      intronic
chr20:18677338(+) A-I      intronic
chr20:18642222(+) A-I      intronic
chr20:18633808(+) A-I      intronic
chr20:18642155(+) A-I      intronic
chr20:18640711(+) A-I      intronic
chr20:18634008(+) A-I      intronic
chr20:18641038(+) A-I      intronic
chr20:18642541(+) A-I      intronic
chr20:18630718(+) A-I      intronic
chr20:18642587(+) A-I      intronic
chr20:18630696(+) A-I      intronic
chr20:18631844(+) A-I      intronic
chr20:18724152(+) A-I      intronic
chr20:18724082(+) A-I      intronic
chr20:18633966(+) A-I      intronic
chr20:18630650(+) A-I      intronic
chr20:18629519(+) A-I      intronic
chr20:18631876(+) A-I      intronic
chr20:18582064(+) A-I      intronic
chr20:18630861(+) A-I      intronic
chr20:18611290(+) A-I      ncRNA
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DTD1
chr20:18629493(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DTD1
chr20:18548221-18548222(+) m6A CDS       27773535
chr20:18549882-18549883(+) m6A intron       24284625//24981863//27773535//22608085
chr20:18549919-18549920(+) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:18549953-18549954(+) m6A intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:18550022-18550023(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:18550042-18550043(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:18550069-18550070(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:18550075-18550076(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:18550160-18550161(+) m6A intron       24284625//24209618//24981863//27773535//22608085
chr20:18550203-18550204(+) m6A intron       24284625//24209618//27773535//22608085
chr20:18568597-18568598(+) m6A 5'UTR//intron       24981863
chr20:18574453-18574454(+) m6A CDS//exon       24209618
chr20:18574459-18574460(+) m6A CDS//exon       24209618
chr20:18576666-18576667(+) m6A CDS//exon       24209618
chr20:18576720-18576721(+) m6A CDS//exon       24209618
chr20:18724760-18724761(+) m6A CDS       -
chr20:18724782-18724783(+) m6A CDS       -
chr20:18724796-18724797(+) m6A CDS       -
chr20:18724822-18724823(+) m6A CDS       -
chr20:18724840-18724841(+) m6A CDS       -
chr20:18744022-18744023(+) m6A 3'UTR       -
chr20:18744078-18744079(+) m6A 3'UTR       22608085
chr20:18744084-18744085(+) m6A 3'UTR       22608085
chr20:18744098-18744099(+) m6A 3'UTR       24981863//22608085
chr20:18744118-18744119(+) m6A 3'UTR       24981863//22608085
chr20:18744139-18744140(+) m6A 3'UTR       24981863//22608085
chr20:18744149-18744150(+) m6A 3'UTR       24981863//26404942//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DTD1
Chromatin K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: DTD1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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