Detail Information

Basic Information:


  VIRBase ID:  

VHID00007254

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 RBM4B
miRBase
Accession/Entrez ID		 zikv-mir-1 83759
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - RBM30//RBM4L//ZCCHC15//ZCCHC21B//ZCRB3B

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RBM4B
chr11:66439413(-) A-I      intronic
chr11:66441125(-) A-I      intronic
chr11:66439423(-) A-I      intronic
chr11:66437023(-) A-I      intronic
chr11:66441123(-) A-I      intronic
chr11:66441162(-) A-I      intronic
chr11:66440118(-) A-I      intronic
chr11:66441205(-) A-I      intronic
chr11:66439439(-) A-I      intronic
chr11:66439769(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RBM4B
chr11:66438199(-) T-C intron -    22484847
chr11:66438200(-) T-C intron -    22484847
chr11:66438236(-) T-C intron -    22484847
chr11:66439315(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RBM4B
chr11:66432613-66432614(-) m6A 3'UTR       27773535
chr11:66432651-66432652(-) m6A 3'UTR       27773535
chr11:66432773-66432774(-) m6A 3'UTR       27773535
chr11:66432873-66432874(-) m6A 3'UTR       -
chr11:66432944-66432945(-) m6A 3'UTR//exon       -
chr11:66433001-66433002(-) m6A 3'UTR//exon       25456834//24981863//22608085
chr11:66433028-66433029(-) m6A 3'UTR//exon       25456834//24981863//22608085
chr11:66433033-66433034(-) m6A 3'UTR//CDS//exon       25456834//24981863//22608085
chr11:66433124-66433125(-) m6A exon//intron       24981863//22608085
chr11:66433412-66433413(-) m6A exon//intron       24981863
chr11:66433473-66433474(-) m6A exon//intron       24981863
chr11:66433478-66433479(-) m6A exon//intron       24981863
chr11:66433608-66433609(-) m6A exon//intron       24981863//22608085
chr11:66433617-66433618(-) m6A exon//intron       24981863//22608085
chr11:66433748-66433749(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr11:66433785-66433786(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr11:66433834-66433835(-) m6A 3'UTR//exon//intron       27773535//22608085
chr11:66433872-66433873(-) m6A 3'UTR//exon//intron       27773535//22608085
chr11:66433946-66433947(-) m6A 3'UTR//exon//intron       24981863//27773535//22575960//22608085
chr11:66433957-66433958(-) m6A 3'UTR//exon//intron       24981863//27773535//22575960//22608085
chr11:66436091-66436092(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//22575960//22608085
chr11:66436119-66436120(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr11:66436269-66436270(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66436341-66436342(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66436355-66436356(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr11:66436435-66436436(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr11:66436579-66436580(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66436598-66436599(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66436620-66436621(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66436701-66436702(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr11:66436720-66436721(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr11:66443035-66443036(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr11:66443043-66443044(-) m6A 3'UTR//intron       24284625//27773535//22608085
chr11:66443147-66443148(-) m6A 3'UTR//intron       27773535
chr11:66443202-66443203(-) m6A 3'UTR//intron       27773535
chr11:66443221-66443222(-) m6A 3'UTR//intron       27773535
chr11:66443228-66443229(-) m6A 3'UTR//intron       27773535
chr11:66443282-66443283(-) m6A 3'UTR//intron       24981863//27773535
chr11:66443374-66443375(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr11:66443382-66443383(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr11:66443510-66443511(-) m6A 3'UTR//intron       24981863//27773535
chr11:66443580-66443581(-) m6A 3'UTR//intron       24981863//27773535
chr11:66443688-66443689(-) m6A 3'UTR//intron       27773535
chr11:66443914-66443915(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr11:66443971-66443972(-) m6A 3'UTR//intron       25456834//24981863//27773535//22608085
chr11:66444062-66444063(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66444070-66444071(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66444077-66444078(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66444087-66444088(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr11:66444133-66444134(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr11:66444648-66444649(-) m6A 5'UTR//intron       27773535
chr11:66444715-66444716(-) m6A 5'UTR//intron       -
chr11:66444782-66444783(-) m6A 5'UTR//intron       27773535
chr11:66444837-66444838(-) m6A 5'UTR//intron       27773535
chr11:66444909-66444910(-) m6A 5'UTR//intron       24284625
chr11:66444980-66444981(-) m6A 5'UTR//intron       24284625//25456834
chr11:66445115-66445116(-) m6A 5'UTR//intron       24284625//25456834
chr11:66445167-66445168(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RBM4B
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: RBM4B

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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