Detail Information

Basic Information:


  VIRBase ID:  

VHID00006854

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 HSPBAP1
miRBase
Accession/Entrez ID		 zikv-mir-1 79663
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - PASS1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HSPBAP1
chr3:122511635(-) A-I      intronic
chr3:122511632(-) A-I      intronic
chr3:122511631(-) A-I      intronic
chr3:122511606(-) A-I      intronic
chr3:122511655(-) A-I      intronic
chr3:122502789(-) A-I      intronic
chr3:122462191(-) A-I      intronic
chr3:122488691(-) A-I      intronic
chr3:122462200(-) A-I      intronic
chr3:122462224(-) A-I      intronic
chr3:122508892(-) A-I      intronic
chr3:122502806(-) A-I      intronic
chr3:122502794(-) A-I      intronic
chr3:122511618(-) A-I      intronic
chr3:122502783(-) A-I      intronic
chr3:122497628(-) A-I      intronic
chr3:122489542(-) A-I      intronic
chr3:122489374(-) A-I      intronic
chr3:122488623(-) A-I      intronic
chr3:122488697(-) A-I      intronic
chr3:122488698(-) A-I      intronic
chr3:122488673(-) A-I      intronic
chr3:122488746(-) A-I      intronic
chr3:122511642(-) A-I      intronic
chr3:122511649(-) A-I      intronic
chr3:122488721(-) A-I      intronic
chr3:122462291(-) A-I      intronic
chr3:122462301(-) A-I      intronic
chr3:122488805(-) A-I      intronic
chr3:122462313(-) A-I      intronic
chr3:122486168(-) A-I      intronic
chr3:122486183(-) A-I      intronic
chr3:122486206(-) A-I      intronic
chr3:122487872(-) A-I      intronic
chr3:122511636(-) A-I      intronic
chr3:122462738(-) A-I      intronic
chr3:122491930(-) A-I      intronic
chr3:122508798(-) A-I      intronic
chr3:122498021(-) A-I      intronic
chr3:122468732(-) A-I      intronic
chr3:122468999(-) A-I      intronic
chr3:122462851(-) A-I      intronic
chr3:122489466(-) A-I      intronic
chr3:122509678(-) A-I      intronic
chr3:122489465(-) A-I      intronic
chr3:122488665(-) A-I      intronic
chr3:122508806(-) A-I      intronic
chr3:122508909(-) A-I      intronic
chr3:122508886(-) A-I      intronic
chr3:122498026(-) A-I      intronic
chr3:122468594(-) A-I      intronic
chr3:122508848(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HSPBAP1
chr3:122508886(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HSPBAP1
chr3:122458849-122458850(-) m6A 3'UTR//exon       27773535
chr3:122458890-122458891(-) m6A 3'UTR//exon       27773535
chr3:122459011-122459012(-) m6A 3'UTR//exon       27773535
chr3:122459114-122459115(-) m6A 3'UTR//exon       27773535
chr3:122459258-122459259(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr3:122459286-122459287(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr3:122459320-122459321(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:122459359-122459360(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:122459389-122459390(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:122459402-122459403(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:122459411-122459412(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:122459455-122459456(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:122459515-122459516(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:122459523-122459524(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:122459537-122459538(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:122459550-122459551(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:122459612-122459613(-) Cm CDS//exon       -
chr3:122459613-122459614(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:122459646-122459647(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr3:122459859-122459860(-) m6A CDS//exon       27773535
chr3:122459896-122459897(-) m6A CDS//exon       27773535
chr3:122459996-122459997(-) m6A exon//intron       27773535
chr3:122471982-122471983(-) m6A exon//intron       27773535
chr3:122472169-122472170(-) m6A exon//intron       27773535
chr3:122472216-122472217(-) m6A exon//intron       27773535
chr3:122472320-122472321(-) m6A exon//intron       27773535
chr3:122472350-122472351(-) m6A exon//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HSPBAP1
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: HSPBAP1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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