Detail Information

Basic Information:


  VIRBase ID:  

VHID00006161

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 CHPT1
miRBase
Accession/Entrez ID		 zikv-mir-1 56994
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CPT//CPT1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CHPT1
chr12:102103908(+) A-I      intronic
chr12:102115730(+) A-I      intronic
chr12:102102479(+) A-I      intronic
chr12:102102475(+) A-I      intronic
chr12:102102522(+) A-I      intronic
chr12:102103023(+) A-I      intronic
chr12:102103054(+) A-I      intronic
chr12:102103963(+) A-I      intronic
chr12:102115781(+) A-I      intronic
chr12:102103028(+) A-I      intronic
chr12:102112954(+) A-I      intronic
chr12:102102992(+) A-I      intronic
chr12:102114851(+) A-I      intronic
chr12:102099630(+) A-I      intronic
chr12:102099643(+) A-I      intronic
chr12:102099897(+) A-I      intronic
chr12:102114899(+) A-I      intronic
chr12:102103070(+) A-I      intronic
chr12:102100021(+) A-I      intronic
chr12:102105942(+) A-I      intronic
chr12:102105960(+) A-I      intronic
chr12:102105939(+) A-I      intronic
chr12:102102540(+) A-I      intronic
chr12:102104004(+) A-I      intronic
chr12:102102896(+) A-I      intronic
chr12:102106067(+) A-I      intronic
chr12:102099629(+) A-I      intronic
chr12:102102417(+) A-I      intronic
chr12:102102916(+) A-I      intronic
chr12:102103016(+) A-I      intronic
chr12:102112275(+) A-I      intronic
chr12:102096318(+) A-I      intronic
chr12:102100017(+) A-I      intronic
chr12:102103868(+) A-I      intronic
chr12:102103970(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CHPT1
chr12:102112819(+) C-T intron -    22484847
chr12:102099962(+) T-C intron -    22484847
chr12:102100017(+) A-G intron -    22484847
chr12:102100021(+) A-G intron -    22484847
chr12:102102417(+) A-G intron -    22484847
chr12:102103868(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CHPT1
chr12:102091547-102091548(+) m6A 5'UTR//intron       24981863
chr12:102108354-102108355(+) Y CDS//exon       26075521
chr12:102117545-102117546(+) Y 3'UTR//CDS       26075521
chr12:102120130-102120131(+) m6A 3'UTR//CDS       27773535
chr12:102120155-102120156(+) m6A 3'UTR//CDS       27773535
chr12:102120178-102120179(+) m6A 3'UTR//CDS       27773535
chr12:102137612-102137613(+) m6A 3'UTR//exon       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CHPT1
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: CHPT1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

Starting a new search, please wait ...