Detail Information

Basic Information:


  VIRBase ID:  

VHID00005775

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 PHF10
miRBase
Accession/Entrez ID		 zikv-mir-1 55274
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - BAF45A//XAP135

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PHF10
chr6:170116923(-) A-I      intronic
chr6:170116926(-) A-I      intronic
chr6:170116930(-) A-I      intronic
chr6:170117168(-) A-I      intronic
chr6:170117236(-) A-I      intronic
chr6:170117180(-) A-I      intronic
chr6:170117282(-) A-I      intronic
chr6:170117182(-) A-I      intronic
chr6:170116943(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PHF10
chr6:170107350-170107351(-) m6A 3'UTR//exon//intron       27773535
chr6:170107401-170107402(-) m6A 3'UTR//exon//intron       27773535
chr6:170107414-170107415(-) m6A 3'UTR//exon//intron       27773535
chr6:170110401-170110402(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:170110415-170110416(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr6:170110431-170110432(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr6:170112551-170112552(-) m6A CDS//exon       24284625//22575960
chr6:170112599-170112600(-) m6A CDS//exon       24284625//22575960
chr6:170121176-170121177(-) m6A 5'UTR//CDS//exon       24209618
chr6:170124074-170124075(-) m6A 5'UTR//exon//intron       24209618
chr6:170125279-170125280(-) m6A intron       24284625//25456834//24981863//22608085
chr6:170125343-170125344(-) m6A intron       24284625//25456834//24981863//22608085
chr6:170125362-170125363(-) m6A intron       24284625//25456834//24981863//22608085
chr6:170125387-170125388(-) m6A intron       24284625//24981863//22608085
chr6:170125579-170125580(-) m6A 5'UTR       24284625//24209618//22608085
chr6:170125618-170125619(-) m6A 5'UTR       24284625//24209618//22608085
chr6:170125658-170125659(-) m6A 5'UTR       24209618//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PHF10
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: PHF10

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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