Detail Information

Basic Information:


  VIRBase ID:  

VHID00004040

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 SNRNP27
miRBase
Accession/Entrez ID		 zikv-mir-1 11017
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - 27K//RY1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SNRNP27
chr2:70127834(+) A-I      intronic
chr2:70128894(+) A-I      intronic
chr2:70128777(+) A-I      intronic
chr2:70128863(+) A-I      intronic
chr2:70128225(+) A-I      intronic
chr2:70128709(+) A-I      intronic
chr2:70130178(+) A-I      intronic
chr2:70128762(+) A-I      intronic
chr2:70130175(+) A-I      intronic
chr2:70127000(+) A-I      intronic
chr2:70128868(+) A-I      intronic
chr2:70130225(+) A-I      intronic
chr2:70127048(+) A-I      intronic
chr2:70128859(+) A-I      intronic
chr2:70128791(+) A-I      intronic
chr2:70127190(+) A-I      intronic
chr2:70127171(+) A-I      intronic
chr2:70128832(+) A-I      intronic
chr2:70128054(+) A-I      intronic
chr2:70122023(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SNRNP27
chr2:70127000(+) A-G intron -    22484847
chr2:70128054(+) A-G intron -    22484847
chr2:70128845(+) C-T intron -    22484847
chr2:70128859(+) A-G intron -    22484847
chr2:70130178(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNRNP27
chr2:70121109-70121110(+) m6A 5'UTR       24284625//25456834//24981863//22608085
chr2:70123643-70123644(+) m6A CDS       24981863//27773535//22608085
chr2:70123652-70123653(+) m6A CDS//exon       24981863//27773535//22608085
chr2:70124514-70124515(+) m6A CDS//exon       24981863//27773535//22608085
chr2:70124528-70124529(+) m6A CDS//exon       24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SNRNP27
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: SNRNP27

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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