Detail Information

Basic Information:


  VIRBase ID:  

VHID00003969

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 PGRMC1
miRBase
Accession/Entrez ID		 zikv-mir-1 10857
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - Dap1//HPR6.6//IZA//MPR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PGRMC1
chrX:118370235-118370236(+) m6A 5'UTR       25456834//24981863
chrX:118370471-118370472(+) m6A CDS       22575960
chrX:118374396-118374397(+) m6A CDS//intron       26404942
chrX:118377135-118377136(+) m6A CDS       26404942//27773535
chrX:118377183-118377184(+) m6A CDS       26404942
chrX:118377499-118377500(+) Y 3'UTR       25219674
chrX:118377691-118377692(+) m6A 3'UTR       26404942
chrX:118377739-118377740(+) m6A 3'UTR       26404942
chrX:118377781-118377782(+) m6A 3'UTR       26404942//27773535
chrX:118377810-118377811(+) m6A 3'UTR       26404942//27773535
chrX:118377818-118377819(+) m6A 3'UTR       26404942//27773535
chrX:118377830-118377831(+) m6A 3'UTR       26404942//27773535
chrX:118377868-118377869(+) m6A 3'UTR       26404942//27773535
chrX:118377914-118377915(+) m6A 3'UTR       26404942//27773535
chrX:118377941-118377942(+) m6A 3'UTR       26404942//27773535
chrX:118378031-118378032(+) m6A 3'UTR       26404942
chrX:118378253-118378254(+) m6A 3'UTR       27773535
chrX:118378288-118378289(+) m6A 3'UTR       27773535
chrX:118378307-118378308(+) m6A 3'UTR       27773535
chrX:118378348-118378349(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PGRMC1
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: PGRMC1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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