Detail Information

Basic Information:


  VIRBase ID:  

VHID00003448

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 HERPUD1
miRBase
Accession/Entrez ID		 zikv-mir-1 9709
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - HERP//Mif1//SUP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HERPUD1
chr16:56974667(+) A-I      intronic
chr16:56974385(+) A-I      intronic
chr16:56974494(+) A-I      intronic
chr16:56974858(+) A-I      intronic
chr16:56974852(+) A-I      intronic
chr16:56974776(+) A-I      intronic
chr16:56974687(+) A-I      intronic
chr16:56974399(+) A-I      intronic
chr16:56974610(+) A-I      intronic
chr16:56974298(+) A-I      intronic
chr16:56974612(+) A-I      intronic
chr16:56974782(+) A-I      intronic
chr16:56974393(+) A-I      intronic
chr16:56974279(+) A-I      intronic
chr16:56976666(+) A-I      intronic
chr16:56974619(+) A-I      intronic
chr16:56974725(+) A-I      intronic
chr16:56974723(+) A-I      intronic
chr16:56974709(+) A-I      intronic
chr16:56974659(+) A-I      intronic
chr16:56974645(+) A-I      intronic
chr16:56976636(+) A-I      intronic
chr16:56974282(+) A-I      intronic
chr16:56974384(+) A-I      intronic
chr16:56976659(+) A-I      intronic
chr16:56974245(+) A-I      intronic
chr16:56974480(+) A-I      intronic
chr16:56974428(+) A-I      intronic
chr16:56974618(+) A-I      intronic
chr16:56974402(+) A-I      intronic
chr16:56974318(+) A-I      intronic
chr16:56974360(+) A-I      intronic
chr16:56974802(+) A-I      intronic
chr16:56974312(+) A-I      intronic
chr16:56974465(+) A-I      intronic
chr16:56974772(+) A-I      intronic
chr16:56974724(+) A-I      intronic
chr16:56974712(+) A-I      intronic
chr16:56974857(+) A-I      intronic
chr16:56974722(+) A-I      intronic
chr16:56974391(+) A-I      intronic
chr16:56974713(+) A-I      intronic
chr16:56968785(+) A-I      intronic
chr16:56974492(+) A-I      intronic
chr16:56974696(+) A-I      intronic
chr16:56974790(+) A-I      intronic
chr16:56974771(+) A-I      intronic
chr16:56974716(+) A-I      intronic
chr16:56974358(+) A-I      intronic
chr16:56974673(+) A-I      intronic
chr16:56974453(+) A-I      intronic
chr16:56974447(+) A-I      intronic
chr16:56974698(+) A-I      intronic
chr16:56974319(+) A-I      intronic
chr16:56975866(+) A-I      intronic
chr16:56974728(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HERPUD1
chr16:56974318(+) A-I intron -    22327324
chr16:56974319(+) A-I intron -    22327324
chr16:56974358(+) A-I intron -    22327324
chr16:56974492(+) A-I intron -    22327324
chr16:56974618(+) A-I intron -    22327324
chr16:56974619(+) A-I intron -    22327324
chr16:56974659(+) A-I intron -    22327324
chr16:56974722(+) A-I intron -    22327324
chr16:56974724(+) A-I intron -    22327324
chr16:56974725(+) A-I intron -    22327324
chr16:56974771(+) A-I intron -    22327324
chr16:56974318(+) A-G intron -    22484847
chr16:56974319(+) A-G intron -    22484847
chr16:56974358(+) A-G intron -    22484847
chr16:56974360(+) A-G intron -    22484847
chr16:56974384(+) A-G intron -    22484847
chr16:56974391(+) A-G intron -    22484847
chr16:56974492(+) A-G intron -    22484847
chr16:56974618(+) A-G intron -    22484847
chr16:56974619(+) A-G intron -    22484847
chr16:56974659(+) A-G intron -    22484847
chr16:56974713(+) A-G intron -    22484847
chr16:56974722(+) A-G intron -    22484847
chr16:56974724(+) A-G intron -    22484847
chr16:56974725(+) A-G intron -    22484847
chr16:56974771(+) A-G intron -    22484847
chr16:56974772(+) A-G intron -    22484847
chr16:56974790(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HERPUD1
chr16:56966068-56966069(+) m6A 5'UTR//exon       24284625//24981863
chr16:56966168-56966169(+) m6A CDS//exon       -
chr16:56966173-56966174(+) m6A CDS//exon       -
chr16:56976020-56976021(+) m6A exon//intron       -
chr16:56976070-56976071(+) m6A CDS//exon//intron       24209618//27773535
chr16:56976087-56976088(+) m6A CDS//exon//intron       24209618//27773535
chr16:56976129-56976130(+) m6A CDS//exon//intron       24284625//24209618//27773535
chr16:56977055-56977056(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535
chr16:56977062-56977063(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535
chr16:56977083-56977084(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085
chr16:56977109-56977110(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085
chr16:56977151-56977152(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22608085
chr16:56977197-56977198(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:56977244-56977245(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:56977282-56977283(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:56977308-56977309(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:56977380-56977381(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HERPUD1
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: HERPUD1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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