Detail Information

Basic Information:


  VIRBase ID:  

VHID00002549

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 TFAM
miRBase
Accession/Entrez ID		 zikv-mir-1 7019
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - MTDPS15//MTTF1//MTTFA//TCF6//TCF6L1//TCF6L2//TCF6L3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TFAM
chr10:60152699(+) A-I      intronic
chr10:60153399(+) A-I      intronic
chr10:60153410(+) A-I      intronic
chr10:60152641(+) A-I      intronic
chr10:60153561(+) A-I      intronic
chr10:60153445(+) A-I      intronic
chr10:60152568(+) A-I      intronic
chr10:60153470(+) A-I      intronic
chr10:60153528(+) A-I      intronic
chr10:60157650(+) A-I      3'UTR
chr10:60152547(+) A-I      intronic
chr10:60152892(+) A-I      intronic
chr10:60153552(+) A-I      intronic
chr10:60152646(+) A-I      intronic
chr10:60153570(+) A-I      intronic
chr10:60152553(+) A-I      intronic
chr10:60153612(+) A-I      intronic
chr10:60153469(+) A-I      intronic
chr10:60152633(+) A-I      intronic
chr10:60152619(+) A-I      intronic
chr10:60153462(+) A-I      intronic
chr10:60153580(+) A-I      intronic
chr10:60152897(+) A-I      intronic
chr10:60153461(+) A-I      intronic
chr10:60152564(+) A-I      intronic
chr10:60157781(+) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TFAM
chr10:60147998-60147999(+) m6A CDS//exon       24981863
chr10:60148494-60148495(+) m6A CDS//exon       24981863//27773535
chr10:60148541-60148542(+) m6A CDS//exon       27773535
chr10:60150544-60150545(+) m6A CDS//exon//intron       27773535
chr10:60150553-60150554(+) m6A CDS//exon//intron       27773535
chr10:60154129-60154130(+) m6A CDS//exon       27773535
chr10:60154142-60154143(+) m6A CDS//exon       27773535
chr10:60154259-60154260(+) m6A CDS//intron       24981863
chr10:60154717-60154718(+) m6A CDS//exon       24981863//27773535
chr10:60154752-60154753(+) m6A CDS//exon       24981863//27773535
chr10:60154803-60154804(+) m6A CDS//exon       24981863//27773535
chr10:60154877-60154878(+) m6A 3'UTR//exon       24981863//26404942
chr10:60154936-60154937(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085
chr10:60154973-60154974(+) m6A 3'UTR       24284625//24981863//26404942//22608085
chr10:60155004-60155005(+) m6A 3'UTR       24981863//26404942//22608085
chr10:60155026-60155027(+) m6A 3'UTR       24981863//26404942//27773535//22608085
chr10:60155046-60155047(+) m6A 3'UTR       24981863//26404942//27773535//22608085
chr10:60155111-60155112(+) m6A 3'UTR       24981863//27773535//22608085
chr10:60155163-60155164(+) Y 3'UTR       26075521
chr10:60158622-60158623(+) m6A 3'UTR       24981863//27773535
chr10:60158649-60158650(+) m6A 3'UTR       24981863//27773535
chr10:60158677-60158678(+) m6A 3'UTR       24981863//27773535
chr10:60158702-60158703(+) m6A 3'UTR       24981863//27773535
chr10:60158767-60158768(+) m6A 3'UTR       27773535
chr10:60158814-60158815(+) m6A 3'UTR       27773535
chr10:60158866-60158867(+) m6A 3'UTR       27773535
chr10:60158940-60158941(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TFAM
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: TFAM

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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