Detail Information

Basic Information:


  VIRBase ID:  

VHID00002236

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 RPS3A
miRBase
Accession/Entrez ID		 zikv-mir-1 6189
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - FTE1//MFTL//S3A

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RPS3A
chr4:152024421(+) A-I intron -    21960545
chr4:152024416(+) A-I intron -    21960545
chr4:152024506(+) A-I intron -    21960545
chr4:152024815(+) A-I intron -    21960545
chr4:152024421(+) A-G intron -    22484847
chr4:152024506(+) A-G intron -    22484847
chr4:152024523(+) A-G intron -    22484847
chr4:152024562(+) T-C intron -    22484847
chr4:152024596(+) T-C intron -    22484847
chr4:152024812(+) A-G intron -    22484847
chr4:152024815(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RPS3A
chr4:152020820-152020821(+) m6A 5'UTR//CDS//exon       -
chr4:152022243-152022244(+) m6A CDS//intron       22575960
chr4:152024052-152024053(+) m6A 3'UTR//CDS//exon       22575960
chr4:152024124-152024125(+) m6A 3'UTR//CDS//exon       27773535
chr4:152024199-152024200(+) m6A 3'UTR//CDS//exon//intron       27773535
chr4:152024308-152024309(+) m6A exon//intron       27773535
chr4:152024551-152024552(+) m6A exon//intron       -
chr4:152024877-152024878(+) m6A exon//intron       27773535
chr4:152024947-152024948(+) m6A exon//intron       26404942//27773535
chr4:152024952-152024953(+) m6A exon//intron       26404942//27773535
chr4:152025098-152025099(+) m6A exon//intron       26404942
chr4:152025107-152025108(+) m6A exon//intron       26404942
chr4:152025685-152025686(+) m6A 3'UTR//CDS       27773535
chr4:152025720-152025721(+) m6A 3'UTR//CDS       24981863//27773535
chr4:152025752-152025753(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RPS3A
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: RPS3A

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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