Detail Information

Basic Information:


  VIRBase ID:  

VHID00002073

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 PSMD3
miRBase
Accession/Entrez ID		 zikv-mir-1 5709
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - P58//RPN3//S3//TSTA2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PSMD3
chr17:38144284(+) A-I      intronic
chr17:38143712(+) A-I      intronic
chr17:38143741(+) A-I      intronic
chr17:38144083(+) A-I      intronic
chr17:38144175(+) A-I      intronic
chr17:38139415(+) A-I      intronic
chr17:38146785(+) A-I      intronic
chr17:38146812(+) A-I      intronic
chr17:38146819(+) A-I      intronic
chr17:38147670(+) A-I      intronic
chr17:38148029(+) A-I      intronic
chr17:38148193(+) A-I      intronic
chr17:38148203(+) A-I      intronic
chr17:38148219(+) A-I      intronic
chr17:38141417(+) A-I      intronic
chr17:38139486(+) A-I      intronic
chr17:38139305(+) A-I      intronic
chr17:38141438(+) A-I      intronic
chr17:38144266(+) A-I      intronic
chr17:38144106(+) A-I      intronic
chr17:38148151(+) A-I      intronic
chr17:38146521(+) A-I      intronic
chr17:38147656(+) A-I      intronic
chr17:38148180(+) A-I      intronic
chr17:38146789(+) A-I      intronic
chr17:38148031(+) A-I      intronic
chr17:38147488(+) A-I      intronic
chr17:38147547(+) A-I      intronic
chr17:38143875(+) A-I      intronic
chr17:38144305(+) A-I      intronic
chr17:38148187(+) A-I      intronic
chr17:38144160(+) A-I      intronic
chr17:38148167(+) A-I      intronic
chr17:38148065(+) A-I      intronic
chr17:38147683(+) A-I      intronic
chr17:38148037(+) A-I      intronic
chr17:38144262(+) A-I      intronic
chr17:38143941(+) A-I      intronic
chr17:38141456(+) A-I      intronic
chr17:38148157(+) A-I      intronic
chr17:38148020(+) A-I      intronic
chr17:38143729(+) A-I      intronic
chr17:38148016(+) A-I      intronic
chr17:38143916(+) A-I      intronic
chr17:38152772(+) A-I      intronic
chr17:38148089(+) A-I      intronic
chr17:38143988(+) A-I      intronic
chr17:38147429(+) A-I      intronic
chr17:38146596(+) A-I      intronic
chr17:38148529(+) A-I      intronic
chr17:38147288(+) A-I      intronic
chr17:38144010(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PSMD3
chr17:38147429(+) A-G intron -    22484847
chr17:38148031(+) A-G intron -    22484847
chr17:38148157(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PSMD3
chr17:38137200-38137201(+) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536//22575960
chr17:38137260-38137261(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr17:38137270-38137271(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr17:38137291-38137292(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr17:38137297-38137298(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr17:38137425-38137426(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960
chr17:38140565-38140566(+) m6A CDS//intron       24284625//24209618//24981863//27371828//27773536//22575960
chr17:38140602-38140603(+) Y CDS//intron       26075521
chr17:38140711-38140712(+) m6A CDS       24284625//22575960
chr17:38142834-38142835(+) m6A CDS       24284625//22575960
chr17:38142945-38142946(+) m6A 3'UTR//CDS//exon       -
chr17:38146013-38146014(+) m6A 3'UTR//CDS//exon       22575960
chr17:38146059-38146060(+) m6A 3'UTR//CDS//exon//intron       22575960
chr17:38146443-38146444(+) m6A 3'UTR//CDS//intron       24284625
chr17:38149289-38149290(+) m6A exon//intron       24284625
chr17:38149303-38149304(+) m6A exon//intron       24284625
chr17:38151436-38151437(+) m6A 3'UTR//CDS//exon//intron       22575960
chr17:38151443-38151444(+) m6A 3'UTR//CDS//exon//intron       22575960
chr17:38151502-38151503(+) m6A 3'UTR//CDS//exon//intron       22575960
chr17:38152363-38152364(+) m6A exon//intron       -
chr17:38153868-38153869(+) m6A 3'UTR//intron       24284625
chr17:38154131-38154132(+) m6A 3'UTR       27773535
chr17:38154137-38154138(+) m6A 3'UTR       27773535
chr17:38154189-38154190(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PSMD3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: PSMD3

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

Starting a new search, please wait ...