Detail

Basic Information:

VIRBase ID:

VHID00002070

Virus:

Zika virus (ZIKV)

Host:

Homo sapiens

Confidence Score:

0.1828

Interaction Type:

Virus-Host interaction

Interactor Information:

	Interactor1	Interactor2
Symbol	zikv-mir-1	PSMC5
miRBase Accession/Entrez ID	zikv-mir-1	5705
Organism	Zika virus (ZIKV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	p45//p45/SUG//RPT6//S8//SUG-1//SUG1//TBP10//TRIP1

RNA Modification:

Resource

Symbol

ModificationPosition

Type

Genomic Context

PMID

RMBase

PSMC5

chr17:61904864-61904865(+)	m6A	5'UTR//CDS//exon	24284625//25456834//24981863
chr17:61904987-61904988(+)	m6A	exon//intron	24284625//24981863//27371828//27773536
chr17:61905478-61905479(+)	m6A	5'UTR//exon//intron	24981863
chr17:61905529-61905530(+)	m6A	CDS//exon//intron	24981863//22575960
chr17:61905562-61905563(+)	m6A	CDS//exon//intron	24981863//22575960
chr17:61905579-61905580(+)	m6A	exon//intron	24981863//22575960
chr17:61905624-61905625(+)	m6A	exon//intron	-
chr17:61906878-61906879(+)	m6A	CDS//exon//intron	24981863//22575960
chr17:61906909-61906910(+)	m6A	CDS//exon//intron	24981863//22575960
chr17:61907164-61907165(+)	m6A	exon//intron	-
chr17:61907332-61907333(+)	m6A	exon//intron	24981863//27773535
chr17:61907383-61907384(+)	m6A	exon//intron	24981863
chr17:61907703-61907704(+)	m6A	3'UTR//CDS//exon	26404942
chr17:61907767-61907768(+)	m6A	3'UTR//CDS//exon	26404942
chr17:61907772-61907773(+)	m6A	3'UTR//CDS//exon	26404942
chr17:61907777-61907778(+)	Cm	3'UTR//CDS//exon	-
chr17:61908185-61908186(+)	m6A	3'UTR//CDS//exon//intron	22575960
chr17:61908204-61908205(+)	m6A	3'UTR//CDS//exon//intron	22575960
chr17:61908238-61908239(+)	m6A	3'UTR//CDS//exon//intron	22575960
chr17:61908269-61908270(+)	m6A	3'UTR//CDS//exon//intron	22575960
chr17:61908512-61908513(+)	m6A	3'UTR//CDS//exon	22575960
chr17:61908578-61908579(+)	m6A	3'UTR//CDS//exon	22575960
chr17:61908720-61908721(+)	m6A	3'UTR//CDS//exon	27773535//22575960
chr17:61908796-61908797(+)	m6A	exon//intron	22575960
chr17:61908875-61908876(+)	m6A	3'UTR//CDS//exon	22575960
chr17:61908905-61908906(+)	m6A	3'UTR//CDS//exon	22575960
chr17:61908998-61908999(+)	m6A	exon//intron	24981863//22575960
chr17:61909147-61909148(+)	m6A	3'UTR//CDS//exon	24981863//27773535//22575960
chr17:61909288-61909289(+)	m6A	3'UTR//CDS//exon	27773535//22575960
chr17:61909300-61909301(+)	m6A	3'UTR//CDS//exon	27773535//22575960
chr17:61909333-61909334(+)	m6A	3'UTR//exon	27773535

RNA Localization:

Resource

Symbol

Subcellular Localization

Tissue or Cell Line

PMID

RNALocate

PSMC5

Chromatin	K562 cells	-
Cytosol	HCC cell line (HepG2)\|K562 cells	-
Exosome	Blood	-
Membrane	K562 cells	-
Nucleolus	K562 cells	-
Nucleoplasm	K562 cells	-
Ribosome	Colon cancer cells	24393600

Interaction Network (The top 100 interactions):

Interactor1: zikv-mir-1

Interactor2: PSMC5

Evidence Support:

Prediction-Evidence	miRanda
Support Database	ZIKV-CDB

Basic Information:

VIRBase ID:

Virus:

Host:

Confidence Score:

Interaction Type:

Interactor Information:

RNA Modification:

RNA Localization:

Interaction Network (The top 100 interactions):

Evidence Support:

Starting a new search, please wait ...