Detail Information

Basic Information:


  VIRBase ID:  

VHID00001730

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 NONO
miRBase
Accession/Entrez ID		 zikv-mir-1 4841
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - MRXS34//NMT55//NRB54//P54//P54NRB//PPP1R114

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NONO
chrX:70513647(+) A-I      intronic
chrX:70513665(+) A-I      intronic
chrX:70513691(+) A-I      intronic
chrX:70513711(+) A-I      intronic
chrX:70513723(+) A-I      intronic
chrX:70513754(+) A-I      intronic
chrX:70515442(+) A-I      intronic
chrX:70515445(+) A-I      intronic
chrX:70515500(+) A-I      intronic
chrX:70515553(+) A-I      intronic
chrX:70515598(+) A-I      intronic
chrX:70515628(+) A-I      intronic
chrX:70516014(+) A-I      intronic
chrX:70516121(+) A-I      intronic
chrX:70516161(+) A-I      intronic
chrX:70516185(+) A-I      intronic
chrX:70512291(+) A-I      ncRNA
chrX:70516198(+) A-I      intronic
chrX:70516222(+) A-I      intronic
chrX:70516223(+) A-I      intronic
chrX:70516224(+) A-I      intronic
chrX:70513199(+) A-I      intronic
chrX:70513154(+) A-I      intronic
chrX:70513157(+) A-I      intronic
chrX:70513176(+) A-I      intronic
chrX:70513247(+) A-I      intronic
chrX:70513256(+) A-I      intronic
chrX:70513273(+) A-I      intronic
chrX:70513280(+) A-I      intronic
chrX:70513283(+) A-I      intronic
chrX:70513312(+) A-I      intronic
chrX:70513420(+) A-I      intronic
chrX:70513562(+) A-I      intronic
chrX:70513621(+) A-I      intronic
chrX:70513624(+) A-I      intronic
chrX:70513662(+) A-I      intronic
chrX:70510054(+) A-I      intronic
chrX:70512213(+) A-I      ncRNA
chrX:70513271(+) A-I      intronic
chrX:70512310(+) A-I      ncRNA
chrX:70513354(+) A-I      intronic
chrX:70513672(+) A-I      intronic
chrX:70516113(+) A-I      intronic
chrX:70515401(+) A-I      intronic
chrX:70513353(+) A-I      intronic
chrX:70516100(+) A-I      intronic
chrX:70512148(+) A-I      ncRNA
chrX:70516095(+) A-I      intronic
chrX:70513362(+) A-I      intronic
chrX:70513365(+) A-I      intronic
chrX:70513648(+) A-I      intronic
chrX:70516096(+) A-I      intronic
chrX:70512282(+) A-I      ncRNA
chrX:70513581(+) A-I      intronic
chrX:70513257(+) A-I      intronic
chrX:70513313(+) A-I      intronic
chrX:70513286(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NONO
chrX:70503407-70503408(+) m6A 5'UTR       24981863
chrX:70503625-70503626(+) m6A 5'UTR//intron       24284625//24981863
chrX:70504266-70504267(+) m6A 5'UTR//exon//intron       24981863
chrX:70510502-70510503(+) m6A CDS//exon//intron       24981863//26404942//27773535
chrX:70510524-70510525(+) m6A CDS//exon//intron       24981863//26404942//27773535
chrX:70511665-70511666(+) m6A 5'UTR//CDS//exon//intron       24981863//26404942//27773535
chrX:70511678-70511679(+) m6A 5'UTR//CDS//exon//intron       24981863//26404942//27773535
chrX:70511749-70511750(+) m6A CDS//exon//intron       -
chrX:70514079-70514080(+) m6A CDS//exon//intron       22575960
chrX:70514085-70514086(+) m6A CDS//exon//intron       22575960
chrX:70514116-70514117(+) m6A CDS//exon//intron       22575960
chrX:70514188-70514189(+) m6A CDS//exon//intron       22575960
chrX:70514213-70514214(+) m6A CDS//exon//intron       22575960
chrX:70514344-70514345(+) m6A CDS//exon//intron       22575960
chrX:70516801-70516802(+) m6A CDS//exon//intron       24209618//24981863//26404942//27773535//22575960
chrX:70516810-70516811(+) m6A CDS//exon//intron       24209618//24981863//26404942//27773535//22575960
chrX:70516848-70516849(+) Gm CDS//exon//intron       -
chrX:70516892-70516893(+) m6A CDS//exon//intron       24209618//24981863//26404942//27773535//27371828//22575960
chrX:70517248-70517249(+) m6A CDS//exon//intron       24209618//24981863//26404942//27773535//27371828//22575960
chrX:70517325-70517326(+) m6A exon//intron       24209618//24981863//26404942//27773535//27371828//27773536//22575960
chrX:70517686-70517687(+) Cm CDS//exon//intron       -
chrX:70517773-70517774(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960
chrX:70517819-70517820(+) m6A exon//intron       24284625//24209618//24981863//27773535//22575960
chrX:70517833-70517834(+) m6A exon//intron       24284625//24209618//24981863//27773535//22575960
chrX:70518290-70518291(+) m6A exon//intron       24981863//22575960
chrX:70518571-70518572(+) m6A CDS//exon//intron       24981863//26404942//22575960
chrX:70518629-70518630(+) m6A CDS//exon//intron       26404942//22575960
chrX:70518654-70518655(+) m6A CDS//exon//intron       26404942//22575960
chrX:70519857-70519858(+) m6A CDS//exon//intron       22575960
chrX:70519906-70519907(+) m6A CDS//exon//intron       22575960
chrX:70519952-70519953(+) m6A 3'UTR//exon//intron       27773535
chrX:70519967-70519968(+) m6A 3'UTR//exon//intron       27773535
chrX:70520098-70520099(+) m6A 3'UTR//exon//intron       27773535
chrX:70520187-70520188(+) m6A 3'UTR//exon//intron       24209618//27773535
chrX:70520388-70520389(+) m6A 3'UTR//exon       24209618//24981863//22575960
chrX:70520505-70520506(+) m6A 3'UTR//exon       24209618//24981863//27773535//22575960
chrX:70520526-70520527(+) m6A 3'UTR//exon       24209618//24981863//27773535
chrX:70520531-70520532(+) m6A 3'UTR//exon       24209618//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NONO
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: NONO

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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