Detail Information

Basic Information:


  VIRBase ID:  

VHID00001043

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-1 GCLC
miRBase
Accession/Entrez ID		 zikv-mir-1 2729
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - GCL//GCS//GLCL//GLCLC

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GCLC
chr6:53368952(-) A-I      intronic
chr6:53386537(-) A-I      intronic
chr6:53386077(-) A-I      intronic
chr6:53386074(-) A-I      intronic
chr6:53386225(-) A-I      intronic
chr6:53386199(-) A-I      intronic
chr6:53386131(-) A-I      intronic
chr6:53407744(-) A-I      intronic
chr6:53386038(-) A-I      intronic
chr6:53400225(-) A-I      intronic
chr6:53386021(-) A-I      intronic
chr6:53386020(-) A-I      intronic
chr6:53398811(-) A-I      intronic
chr6:53369122(-) A-I      intronic
chr6:53386081(-) A-I      intronic
chr6:53400140(-) A-I      intronic
chr6:53405931(-) A-I      intronic
chr6:53406901(-) A-I      intronic
chr6:53368943(-) A-I      intronic
chr6:53407644(-) A-I      intronic
chr6:53407570(-) A-I      intronic
chr6:53407557(-) A-I      intronic
chr6:53406873(-) A-I      intronic
chr6:53406798(-) A-I      intronic
chr6:53400329(-) A-I      intronic
chr6:53365852(-) A-I      intronic
chr6:53362736(-) A-I      3'UTR
chr6:53398730(-) A-I      intronic
chr6:53405898(-) A-I      intronic
chr6:53386026(-) A-I      intronic
chr6:53406797(-) A-I      intronic
chr6:53398660(-) A-I      intronic
chr6:53386515(-) A-I      intronic
chr6:53398658(-) A-I      intronic
chr6:53406763(-) A-I      intronic
chr6:53386135(-) A-I      intronic
chr6:53405968(-) A-I      intronic
chr6:53402377(-) A-I      intronic
chr6:53400096(-) A-I      intronic
chr6:53406854(-) A-I      intronic
chr6:53406764(-) A-I      intronic
chr6:53405988(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GCLC
chr6:53386026(-) A-G intron -    22484847
chr6:53386132(-) A-G intron -    22484847
chr6:53386135(-) A-G intron -    22484847
chr6:53406763(-) A-G intron -    22484847
chr6:53406764(-) A-G intron -    22484847
chr6:53406854(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GCLC
chr6:53363309-53363310(-) m6A 3'UTR//exon       24981863//26404942//27773535
chr6:53363455-53363456(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr6:53363468-53363469(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr6:53363518-53363519(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr6:53363552-53363553(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr6:53363570-53363571(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr6:53363698-53363699(-) m6A CDS//exon       26404942
chr6:53363719-53363720(-) m6A CDS//exon       26404942
chr6:53363760-53363761(-) m6A CDS//exon       26404942
chr6:53364874-53364875(-) m6A CDS//exon       26404942
chr6:53364895-53364896(-) m6A CDS//exon       26404942
chr6:53364913-53364914(-) m6A CDS//exon       26404942
chr6:53364928-53364929(-) m6A CDS//exon       26404942
chr6:53364945-53364946(-) m6A CDS//exon       26404942
chr6:53372363-53372364(-) m6A CDS//exon       26404942
chr6:53372405-53372406(-) m6A CDS//exon       26404942
chr6:53373398-53373399(-) m6A 3'UTR//CDS//exon       26404942
chr6:53373415-53373416(-) m6A 3'UTR//CDS//exon       26404942
chr6:53374757-53374758(-) m6A exon//intron       27773535
chr6:53374947-53374948(-) m6A exon//intron       27773535
chr6:53374961-53374962(-) m6A exon//intron       27773535
chr6:53375052-53375053(-) m6A exon//intron       27773535
chr6:53379096-53379097(-) m6A 3'UTR//CDS       26404942
chr6:53379125-53379126(-) m6A 3'UTR//CDS       26404942
chr6:53385684-53385685(-) m6A CDS//intron       24981863//26404942//27773535
chr6:53385700-53385701(-) m6A CDS//intron       24981863//26404942//27773535
chr6:53385708-53385709(-) m6A CDS//intron       24981863//26404942//27773535
chr6:53385739-53385740(-) m6A CDS//intron       24981863//26404942//27773535
chr6:53387222-53387223(-) m6A CDS//intron       24981863//26404942//27773535
chr6:53387246-53387247(-) m6A CDS//intron       26404942//27773535
chr6:53409327-53409328(-) m6A CDS//intron       24209618
chr6:53409400-53409401(-) m6A CDS//intron       24284625//24209618
chr6:53409589-53409590(-) m6A 5'UTR//intron       24209618//27371828//27773536
chr6:53409647-53409648(-) m6A 5'UTR//intron       24209618//27371828//27773536
chr6:53409809-53409810(-) m6A 5'UTR//intron       24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960
chr6:53409824-53409825(-) m1A 5'UTR//intron       26863196//26863410
chr6:53409871-53409872(-) m6A 5'UTR//intron       25456834//24981863//26404942//27773535//27371828
chr6:53409921-53409922(-) m6A 5'UTR//intron       24981863
chr6:53427258-53427259(-) m6A intron       24981863
chr6:53427270-53427271(-) m6A intron       24981863
chr6:53427297-53427298(-) m6A intron       24981863
chr6:53427331-53427332(-) m6A intron       24981863
chr6:53427345-53427346(-) m6A intron       24981863
chr6:53428865-53428866(-) m6A intron       24981863
chr6:53428885-53428886(-) m6A intron       24981863
chr6:53429078-53429079(-) m6A 5'UTR       24981863
chr6:53429165-53429166(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GCLC
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-1
Interactor2: GCLC

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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