Detail Information

Basic Information:


  VIRBase ID:  

HVID00010609

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1249-5p S
miRBase
Accession/Entrez ID		 MIMAT0032029 43740568
Organism Homo sapiens SARS-CoV-2 (NC_045512.2)
Category miRNA mRNA
Alias - GU280_gp02//spike glycoprotein

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1249-5p
rs1399375206 chr22:45201008    C/G
rs1428329405 chr22:45201016    T/C
rs1437874588 chr22:45200995    C/A
rs568509176 chr22:45201004    T/A
rs746269146 chr22:45201001    C/T
rs753665756 chr22:45201004    T/TCTCCTCC
rs766236574 chr22:45201003    A/AT
rs776038412 chr22:45201007    C/T
rs779104734 chr22:45200998    G/A
rs997039598 chr22:45200994    A/C
rs1029013080 chr22:45201012    C/A
rs761335728 chr22:45201013    T/A

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1249-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1249-5p
Interactor2: S

Evidence Support:


Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 33173539 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description We identified 1,018 miRNAs to target SARS-CoV-2 genes, among which 98 miRNAs are predicted to target SARS-CoV-2 genes uniquely when compared with other viruses studied here (Supplementary Table S6).

Starting a new search, please wait ...