Detail Information

Basic Information:


  VIRBase ID:  

HVID00010136

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-5047 NC_045512.2
miRBase
Accession/Entrez ID		 MIMAT0020541 NC_045512.2
Organism Homo sapiens SARS-CoV-2 (NC_045512.2)
Category miRNA unassigned RNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-5047
rs1045157665 chr17:64501234    T/C
rs1244074023 chr17:64501232    C/T
rs1265927253 chr17:64501240    C/T
rs1464136604 chr17:64501236    C/T
rs373566078 chr17:64501241    G/A

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-5047
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-5047
Interactor2: NC_045512.2

Evidence Support:


Prediction-Evidence RNA22//Targetscan
Support Database ViRBase

References:


PMID 32858958 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Upon comparison of our list of 128 miRNA candidates with miRNA identified in previous reports revealed several miRNA in common. Specifically, there were 48 miRNA in common with Fulzele et al. (2020) [20], 32 miRNA in common with Saar Demirci and Adan (2020) [21], and 11 miRNA in common between all three studies (Figure 5). The 11 common miRNA include hsa-miR-5047 hsa-miR-1301-3p, hsa-miR-125a-3p, hsa-miR-196a-5p, hsa-miR-19b-2-5p, hsa-miR-4758-5p, hsa-miR-141-3p, hsa-miR-1202, hsa-miR-19b-1-5p, hsa-miR-15b-3p and hsa-miR-153-5p.

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