Detail Information

Basic Information:


  VIRBase ID:  

HVID00009417

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-628-3p E
miRBase
Accession/Entrez ID		 MIMAT0003297 43740570
Organism Homo sapiens SARS-CoV-2 (NC_045512.2)
Category miRNA mRNA
Alias - GU280_gp04

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-628-3p
rs1216611749 chr15:55372964    C/T
rs148138194 chr15:55372952    CTTCGA/C
rs749619551 chr15:55372962    C/T
rs756600789 chr15:55372956    G/A
rs778157225 chr15:55372957    A/C
rs778157225 chr15:55372957    A/G
rs1158103480 chr15:55372967    T/C
rs1158103480 chr15:55372967    T/G
rs1322836365 chr15:55372971    TAGA/T
rs1401315366 chr15:55372972    A/G
rs1410255602 chr15:55372973    G/C

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-628-3p
Exosome Plasma     23663360
Exosome Human mast cell line (HMC-1)     24009880
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-628-3p
Interactor2: E

Evidence Support:


Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 33173539 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description We identified 1,018 miRNAs to target SARS-CoV-2 genes, among which 98 miRNAs are predicted to target SARS-CoV-2 genes uniquely when compared with other viruses studied here (Supplementary Table S6).

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