Detail Information

Basic Information:


  VIRBase ID:  

HVID00009169

  Virus:  

SARS-CoV-2 (MTO49951.1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-6842-3p 3'UTR
miRBase
Accession/Entrez ID		 MIMAT0027587 3'UTR
Organism Homo sapiens SARS-CoV-2 (MTO49951.1)
Category miRNA unassigned RNA
Alias -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-6842-3p
rs1304767805 chr8:27433421    T/C
rs1390477931 chr8:27433424    C/G
rs373669820 chr8:27433431    G/A
rs373669820 chr8:27433431    G/C
rs772390639 chr8:27433422    C/A
rs772390639 chr8:27433422    C/G
rs775833472 chr8:27433430    C/T
rs777068626 chr8:27433432    C/T
rs1402821269 chr8:27433420    G/A

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-6842-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-6842-3p
Interactor2: 3'UTR

Evidence Support:


Prediction-Evidence miRWalk//RNAHybrid//TransmiR
Support Database ViRBase

References:


PMID 32835083 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description According to affinity examination between 3'UTR of SARS-CoV-2 and all 1872 miRNAs, 42 miRNAs with the highest score were identified (Table 3 ).

Starting a new search, please wait ...