Detail Information

Basic Information:


  VIRBase ID:  

HVID00009147

  Virus:  

SARS-CoV-2 (MTO49951.1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1268b 3'UTR
miRBase
Accession/Entrez ID		 MIMAT0018925 3'UTR
Organism Homo sapiens SARS-CoV-2 (MTO49951.1)
Category miRNA unassigned RNA
Alias -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1268b
rs1222208792 chr17:80098848    G/A
rs1222208792 chr17:80098848    G/T
rs1228621577 chr17:80098840    T/C
rs1282084939 chr17:80098842    G/A
rs1377910066 chr17:80098840    T/TG
rs1449528405 chr17:80098843    T/G
rs1456165025 chr17:80098849    T/G
rs148335705 chr17:80098843    T/TG
rs565586973 chr17:80098831    C/T
rs893367645 chr17:80098846    G/T
rs1007008765 chr17:80098832    G/A
rs1290047771 chr17:80098837    T/C
rs1405843504 chr17:80098834    G/A
rs532706583 chr17:80098836    G/A
rs535896040 chr17:80098835    C/G
rs535896040 chr17:80098835    C/T

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1268b
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1268b
Interactor2: 3'UTR

Evidence Support:


Prediction-Evidence miRWalk//RNAHybrid//TransmiR
Support Database ViRBase

References:


PMID 32835083 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description According to affinity examination between 3'UTR of SARS-CoV-2 and all 1872 miRNAs, 42 miRNAs with the highest score were identified (Table 3 ).

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