Detail Information

Basic Information:


  VIRBase ID:  

HVID00009123

  Virus:  

SARS-CoV-2 (MT435086)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-5197-3p MT435086
miRBase
Accession/Entrez ID		 MIMAT0021131 MT435086
Organism Homo sapiens SARS-CoV-2 (MT435086)
Category miRNA unassigned RNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-5197-3p
rs1347866830 chr5:143679936    G/C
rs1405555825 chr5:143679942    G/A
rs1411653302 chr5:143679932    C/A
rs892818585 chr5:143679941    C/T
rs77549240 chr5:143679930    G/T

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-5197-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-5197-3p
Interactor2: MT435086

Evidence Support:


Prediction-Evidence RNAHybrid
Support Database ViRBase

References:


PMID 32771962 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description According to the criteria obtained for selection, we found 4 effective pairings hsa-mir-1267, hsa-mir-325, hsa-mir-5683, hsa-mir-3064-5p among the China; 6 effective pairings hsa-mir-5197, hsa-mir-147b, hsa-mir-6874, hsa-mir-138-1, hsa-mir-664b, hsa-mir-1-3p among India, 5 including hsa-mir-1267, hsa-mir-6874, hsa-mir-4425, hsa-mir-138-1, hsa-mir-1-3p among the US; 4 interactions hsa-mir-1267, has-mir-138-1, has-mir-664b, hsa-mir-1-3p among Italy and finally 3 collective pairing hsa-mir-1267, hsa-mir-325, hsa-mir-5683 among Jamaica particularly the human miRNAs involved with viral SARS-CoV2 miRNAs Fig. 5.

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