Detail Information

Basic Information:


  VIRBase ID:  

HVID00009026

  Virus:  

SARS-CoV-2 (MT344963.1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1304-5p ORF3a
miRBase
Accession/Entrez ID		 MIMAT0005892 ORF3a
Organism Homo sapiens SARS-CoV-2 (MT344963.1)
Category miRNA mRNA
Alias -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1304-5p
rs1360520725 chr11:93733726    C/T
rs1362552303 chr11:93733733    C/T
rs749880345 chr11:93733735    G/A
rs749880345 chr11:93733735    G/T
rs780506580 chr11:93733725    A/C
rs1411147958 chr11:93733742    C/T
rs748549386 chr11:93733740    C/A
rs76857625 chr11:93733744    A/G
rs779470949 chr11:93733739    C/T
rs780392471 chr11:93733739    C/CATTGAGCCCAGGGGTT
rs79759099 chr11:93733743    A/G

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1304-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1304-5p
Interactor2: ORF3a

Evidence Support:


Prediction-Evidence miRanda//miRTarP
Support Database ViRBase

References:


PMID 33801496 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Additionally, if targets are selected by both tools in at least two strains of SARS-CoV-2, we only considered them as potential targets of miRNA on SARS-CoV-2 (Table S2). In Table 1, we present the list of miRNAs meeting all these criteria.

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