Detail Information

Basic Information:


  VIRBase ID:  

HVID00008976

  Virus:  

SARS-CoV-2 (MT324062.1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-598-5p N
miRBase
Accession/Entrez ID		 MIMAT0026620 N
Organism Homo sapiens SARS-CoV-2 (MT324062.1)
Category miRNA mRNA
Alias -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-598-5p
rs1395155483 chr8:11035270    G/A
rs1424010507 chr8:11035266    A/G
rs375021170 chr8:11035268    C/T
rs567350476 chr8:11035257    G/T
rs750251377 chr8:11035271    G/A
rs750251377 chr8:11035271    G/T
rs751516646 chr8:11035262    C/G
rs751516646 chr8:11035262    C/T
rs763022471 chr8:11035258    C/G
rs763022471 chr8:11035258    C/T
rs764114801 chr8:11035260    C/G
rs767456590 chr8:11035269    G/A
rs778217028 chr8:11035279    C/G
rs368666689 chr8:11035278    G/A
rs368666689 chr8:11035278    G/T
rs537980485 chr8:11035275    A/G
rs779578147 chr8:11035277    C/A
rs779578147 chr8:11035277    C/T

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-598-5p
Exosome Plasma     23663360
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cerebrospinal fluid     24797360
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
Mitochondrion Myotube     27396686
Mitochondrion Skeletal muscle cells     27563705
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleus Neural progenitor cells     21363885

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-598-5p
Interactor2: N

Evidence Support:


Prediction-Evidence miRanda//miRTarP
Support Database ViRBase

References:


PMID 33801496 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Additionally, if targets are selected by both tools in at least two strains of SARS-CoV-2, we only considered them as potential targets of miRNA on SARS-CoV-2 (Table S2). In Table 1, we present the list of miRNAs meeting all these criteria.

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