Detail Information

Basic Information:


  VIRBase ID:  

HVID00008564

  Virus:  

SARS coronavirus Tor2

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-6885-5p sars9b
miRBase
Accession/Entrez ID		 MIMAT0027670 1489679
Organism Homo sapiens SARS coronavirus Tor2
Category miRNA mRNA
Alias - sars9b

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-6885-5p
rs1251513113 chr19:6389664    CAGGGTCCCTGGCT/C
rs1274277090 chr19:6389676    C/T
rs371866543 chr19:6389678    T/A
rs567365656 chr19:6389686    G/A
rs567365656 chr19:6389686    G/C
rs765444527 chr19:6389685    C/A
rs765444527 chr19:6389685    C/T
rs769595309 chr19:6389681    C/T
rs781218087 chr19:6389674    G/A
rs78293125 chr19:6389688    A/G
rs985538519 chr19:6389682    T/C
rs985538519 chr19:6389682    T/G
rs1407719384 chr19:6389691    GC/G
rs1446705139 chr19:6389697    C/T
rs539228700 chr19:6389695    C/A
rs547090990 chr19:6389691    G/A
rs566814962 chr19:6389694    C/A
rs566814962 chr19:6389694    C/G
rs566814962 chr19:6389694    C/T
rs764497704 chr19:6389696    C/A
rs764497704 chr19:6389696    C/G
rs764497704 chr19:6389696    C/T
rs767032487 chr19:6389692    C/A
rs767032487 chr19:6389692    C/G
rs767032487 chr19:6389692    C/T

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-6885-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-6885-5p
Interactor2: sars9b

Evidence Support:


Prediction-Evidence miRTarP
Support Database ViRBase

References:


PMID 33173539 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Interestingly, we observed that 717 miRNAs targeting SARS-CoV-2 genes are common with those targeting SARS-CoV genes, possibly due to high genome similarity (Xu et al., 2020; Zhang and Holmes, 2020, p. 2) (Supplementary Table S7).

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