Detail Information

Basic Information:


  VIRBase ID:  

HVID00008480

  Virus:  

SARS coronavirus Tor2

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-6853-3p sars9b
miRBase
Accession/Entrez ID		 MIMAT0027607 1489679
Organism Homo sapiens SARS coronavirus Tor2
Category miRNA mRNA
Alias - sars9b

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-6853-3p
rs1218094870 chr9:35732971    GCCT/G
rs1390035372 chr9:35732992    G/A
rs1450974570 chr9:35732974    T/G
rs201625380 chr9:35732995    G/T
rs748445469 chr9:35732994    A/AG
rs752064748 chr9:35732984    A/C
rs755038363 chr9:35732964    GGTCAAGGCCT/G
rs759999178 chr9:35732990    G/A
rs766869557 chr9:35732982    G/A
rs779031585 chr9:35732985    AC/A
rs1265100541 chr9:35732980    T/C
rs1476741469 chr9:35732981    T/G
rs377372108 chr9:35732979    A/G
rs377372108 chr9:35732979    A/T
rs778351329 chr9:35732977    T/TCATTGGAACCCTGCG

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-6853-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-6853-3p
Interactor2: sars9b

Evidence Support:


Prediction-Evidence miRTarP
Support Database ViRBase

References:


PMID 33173539 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Interestingly, we observed that 717 miRNAs targeting SARS-CoV-2 genes are common with those targeting SARS-CoV genes, possibly due to high genome similarity (Xu et al., 2020; Zhang and Holmes, 2020, p. 2) (Supplementary Table S7).

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