Detail Information

Basic Information:


  VIRBase ID:  

HVID00006888

  Virus:  

SARS coronavirus Tor2

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1202 N
miRBase
Accession/Entrez ID		 MIMAT0005865 1489678
Organism Homo sapiens SARS coronavirus Tor2
Category miRNA mRNA
Alias - sars9a

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1202
rs112508646 chr6:155946821    G/A
rs1367515655 chr6:155946823    G/A
rs1386395252 chr6:155946829    G/A
rs374108336 chr6:155946827    G/A
rs377167080 chr6:155946824    G/A
rs771245340 chr6:155946818    G/A
rs773404713 chr6:155946809    G/A
rs773404713 chr6:155946809    G/T
rs1355211626 chr6:155946812    C/G

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1202
Exosome Human colon carcinoma-derived cell line (HCT-116)     30221678
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1202
Interactor2: N

Evidence Support:


Prediction-Evidence IntaRNA//miRanda//psRNATarget
Support Database ViRBase

References:


PMID 32765592 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description From our rigorous analysis pipeline, which covers three different well-established algorithms (IntaRNA, miRanda, and psRNATarget) to predict RNA-RNA interactions, we have identified 122 and 106 host antiviral miRNAs against SARS-CoV (R) and SARS-CoV-2 (R), respectively (Figures 2A,B, Supplementary File 2).

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