Detail Information

Basic Information:


  VIRBase ID:  

HVID00005951

  Virus:  

Human papillomavirus type 18

  Host:  

Homo sapiens

  Confidence Score:  

0.9490

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-378a-5p E6
miRBase
Accession/Entrez ID
MIMAT0000731 1489088
Organism Homo sapiens Human papillomavirus type 18
Category miRNA protein
Alias - HpV18gp1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-378a-5p
rs1195025900 chr5:149732846    T/A
rs1329713344 chr5:149732828    GC/G
rs1361372361 chr5:149732844    C/T
rs1457638573 chr5:149732841    GGTCCTGT/G
rs781166851 chr5:149732847    G/T
rs951679960 chr5:149732840    A/T
rs1375418377 chr5:149732827    GGCTCCTGACTCCAGGT/G
rs1387429942 chr5:149732833    T/A
rs376185067 chr5:149732836    C/G
rs979812780 chr5:149732831    C/T

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-378a-5p
Exosome Plasma     29323722
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
Exosome Plasma     23663360
Exosome Blood|B lymphoblastoid cells|Breast milk|Colon tissue|Epithelial cells|Kidney tissue|Lymphoma tissue|Mast cells|Tongue tissue     -
Microvesicle Plasma     23077538
Microvesicle Serum     24797360
Microvesicle Blood|Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-378a-5p
Interactor2: E6

Evidence Support:


Strong-Evidence Northern blot//RT-qPCR
Weak-Evidence MiRNA microarray//MiRNA sequencing
Support Database ViRBase

References:


PMID 24591631 Target region None
Source ViRBase Interactor1 expression Upregulation
Tissue or cell line HFKs cells//HVK cells Interactor2 expression None
Description These observations validated the specificity of E6 and E7 activities. In addition, HPV18 E7 had a stronger positive effect than HPV18 E6 on the expression of miR-16 and miR-378, whereas both viral oncoproteins functioned similarly in inducing a moderate increase of miR-92a expression (Fig. 3). Interestingly, miR-22, miR-27a, miR-29a, and miR-100 were all moderately down-regulated by either E6 or E7, with miR-22 and miR-27a being slightly more susceptible to E7 than to E6 (Fig. 3).

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