Detail Information

Basic Information:


  VIRBase ID:  

HVID00005649

  Virus:  

Gallid alphaherpesvirus 2

  Host:  

Gallus gallus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Virus interaction

Interactor Information:


Interactor1 Interactor2
Symbol gga-miR-1808 MDV010
miRBase
Accession/Entrez ID		 MIMAT0007726 4811470
Organism Gallus gallus Gallid alphaherpesvirus 2
Category miRNA mRNA
Alias - GaHV2Md5_gp010//MD5V_010

Interaction Network (The top 100 interactions):


Interactor1: gga-miR-1808
Interactor2: MDV010

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence PARalyzer
Support Database ViRBase

References:


PMID 24449754 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line MSB1 cells Interactor2 expression None
Description A list of all RISC binding clusters identified, with their predicted miRNAs, is given in Table S1 in the supplemental material. Of these 16,585 binding clusters, PARalyzer predicted 1, 104 cellular mRNAs that were bound by one or more MDV-1 miRNAs, while 1, 183 cellular mRNAs were predicted to be bound by one or more MDV-2 miRNAs.

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