Detail Information

Basic Information:


  VIRBase ID:  

HHID00109283

  Virus:  

Severe acute respiratory syndrome-related coronavirus (SARS)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol CTC-523E23.1 SMAD3
miRBase
Accession/Entrez ID		 CTC-523E23.1 4088
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - HSPC193//HsT17436//JV15-2//LDS1C//LDS3//MADH3

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt PMID
LincSNP 3.0 CTC-523E23.1
rs1345654 chr19:34812332 A/G         22484627
rs8107207 chr19:34811994 C/T         22484627
rs10417794 chr19:34813601 A/G         22484627

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SMAD3
chr15:67452930(+) A-I      intronic
chr15:67452962(+) A-I      intronic
chr15:67358882(+) A-I      intronic
chr15:67451670(+) A-I      intronic
chr15:67451671(+) A-I      intronic
chr15:67452947(+) A-I      intronic
chr15:67394254(+) A-I      intronic
chr15:67451683(+) A-I      intronic
chr15:67451672(+) A-I      intronic
chr15:67452950(+) A-I      intronic
chr15:67394253(+) A-I      intronic
chr15:67362173(+) A-I      intronic
chr15:67403460(+) A-I      intronic
chr15:67451592(+) A-I      intronic
chr15:67451581(+) A-I      intronic
chr15:67451570(+) A-I      intronic
chr15:67416609(+) A-I      intronic
chr15:67416603(+) A-I      intronic
chr15:67416411(+) A-I      intronic
chr15:67416365(+) A-I      intronic
chr15:67416349(+) A-I      intronic
chr15:67415758(+) A-I      intronic
chr15:67389768(+) A-I      intronic
chr15:67389769(+) A-I      intronic
chr15:67415506(+) A-I      intronic
chr15:67415445(+) A-I      intronic
chr15:67415389(+) A-I      intronic
chr15:67367127(+) A-I      intronic
chr15:67452943(+) A-I      intronic
chr15:67456585(+) A-I      intronic
chr15:67412396(+) A-I      intronic
chr15:67456466(+) A-I      intronic
chr15:67389771(+) A-I      intronic
chr15:67368181(+) A-I      intronic
chr15:67456616(+) A-I      intronic
chr15:67456372(+) A-I      intronic
chr15:67412356(+) A-I      intronic
chr15:67456581(+) A-I      intronic
chr15:67405627(+) A-I      intronic
chr15:67366170(+) A-I      intronic
chr15:67456546(+) A-I      intronic
chr15:67392319(+) A-I      intronic
chr15:67412179(+) A-I      intronic
chr15:67456542(+) A-I      intronic
chr15:67456516(+) A-I      intronic
chr15:67456471(+) A-I      intronic
chr15:67456470(+) A-I      intronic
chr15:67368088(+) A-I      intronic
chr15:67366112(+) A-I      intronic
chr15:67389693(+) A-I      intronic
chr15:67367131(+) A-I      intronic
chr15:67367102(+) A-I      intronic
chr15:67367157(+) A-I      intronic
chr15:67455501(+) A-I      intronic
chr15:67366211(+) A-I      intronic
chr15:67366195(+) A-I      intronic
chr15:67366149(+) A-I      intronic
chr15:67366142(+) A-I      intronic
chr15:67366113(+) A-I      intronic
chr15:67410310(+) A-I      intronic
chr15:67455495(+) A-I      intronic
chr15:67368114(+) A-I      intronic
chr15:67455405(+) A-I      intronic
chr15:67455376(+) A-I      intronic
chr15:67453054(+) A-I      intronic
chr15:67412228(+) A-I      intronic
chr15:67453053(+) A-I      intronic
chr15:67453034(+) A-I      intronic
chr15:67453018(+) A-I      intronic
chr15:67415675(+) A-I      intronic
chr15:67368202(+) A-I      intronic
chr15:67366106(+) A-I      intronic
chr15:67366069(+) A-I      intronic
chr15:67366061(+) A-I      intronic
chr15:67453015(+) A-I      intronic
chr15:67415386(+) A-I      intronic
chr15:67453011(+) A-I      intronic
chr15:67452994(+) A-I      intronic
chr15:67452958(+) A-I      intronic
chr15:67452927(+) A-I      intronic
chr15:67452894(+) A-I      intronic
chr15:67452891(+) A-I      intronic
chr15:67452855(+) A-I      intronic
chr15:67452839(+) A-I      intronic
chr15:67415717(+) A-I      intronic
chr15:67451509(+) A-I      intronic
chr15:67451652(+) A-I      intronic
chr15:67451609(+) A-I      intronic
chr15:67451606(+) A-I      intronic
chr15:67456143(+) A-I      intronic
chr15:67410283(+) A-I      intronic
chr15:67412332(+) A-I      intronic
chr15:67451478(+) A-I      intronic
chr15:67412397(+) A-I      intronic
chr15:67367047(+) A-I      intronic
chr15:67368106(+) A-I      intronic
chr15:67363921(+) A-I      intronic
chr15:67455555(+) A-I      intronic
chr15:67416500(+) A-I      intronic
chr15:67455512(+) A-I      intronic
chr15:67367189(+) A-I      intronic
chr15:67415375(+) A-I      intronic
chr15:67415739(+) A-I      intronic
chr15:67415579(+) A-I      intronic
chr15:67443457(+) A-I      intronic
chr15:67415685(+) A-I      intronic
chr15:67368133(+) A-I      intronic
chr15:67368119(+) A-I      intronic
chr15:67452882(+) A-I      intronic
chr15:67368174(+) A-I      intronic
chr15:67367193(+) A-I      intronic
chr15:67416427(+) A-I      intronic
chr15:67366220(+) A-I      intronic
chr15:67416492(+) A-I      intronic
chr15:67362144(+) A-I      intronic
chr15:67367097(+) A-I      intronic
chr15:67476581(+) A-I      intronic
chr15:67368185(+) A-I      intronic
chr15:67415373(+) A-I      intronic
chr15:67415687(+) A-I      intronic
chr15:67410410(+) A-I      intronic
chr15:67362114(+) A-I      intronic
chr15:67421012(+) A-I      intronic
chr15:67410364(+) A-I      intronic
chr15:67455333(+) A-I      intronic
chr15:67368100(+) A-I      intronic
chr15:67416601(+) A-I      intronic
chr15:67410351(+) A-I      intronic
chr15:67452978(+) A-I      intronic
chr15:67415787(+) A-I      intronic
chr15:67405710(+) A-I      intronic
chr15:67455441(+) A-I      intronic
chr15:67366158(+) A-I      intronic
chr15:67368198(+) A-I      intronic
chr15:67455332(+) A-I      intronic
chr15:67368203(+) A-I      intronic
chr15:67363962(+) A-I      intronic
chr15:67415671(+) A-I      intronic
chr15:67415676(+) A-I      intronic
chr15:67405711(+) A-I      intronic
chr15:67405702(+) A-I      intronic
chr15:67368210(+) A-I      intronic
chr15:67416395(+) A-I      intronic
chr15:67416561(+) A-I      intronic
chr15:67415408(+) A-I      intronic
chr15:67415680(+) A-I      intronic
chr15:67368146(+) A-I      intronic
chr15:67410342(+) A-I      intronic
chr15:67416562(+) A-I      intronic
chr15:67456395(+) A-I      intronic
chr15:67362119(+) A-I      intronic
chr15:67478497(+) A-I      intronic
chr15:67368044(+) A-I      intronic
chr15:67452949(+) A-I      intronic
chr15:67363875(+) A-I      intronic
chr15:67483483(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SMAD3
chr15:67368146(+) A-G intron -    22484847
chr15:67415675(+) A-G intron -    22484847
chr15:67451478(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SMAD3
chr15:67356224-67356225(+) m6A 5'UTR       24981863
chr15:67356275-67356276(+) m6A 5'UTR       24981863
chr15:67358549-67358550(+) m1A CDS//intron       26863196//26863410
chr15:67358614-67358615(+) m6A CDS//intron       24284625//24981863//26404942
chr15:67390932-67390933(+) m6A 5'UTR//intron       24284625
chr15:67418223-67418224(+) m6A 5'UTR//intron       24981863
chr15:67457312-67457313(+) m6A 5'UTR//CDS//exon       24284625
chr15:67457419-67457420(+) m6A CDS//exon       24284625//24981863
chr15:67457677-67457678(+) m6A CDS//exon       24284625//24981863
chr15:67459093-67459094(+) m6A 5'UTR//intron       24284625//24981863
chr15:67459118-67459119(+) m6A 5'UTR//CDS//exon       24284625//24981863
chr15:67459154-67459155(+) m6A 5'UTR//CDS//exon       24284625//24981863//26404942
chr15:67459173-67459174(+) m6A CDS//exon       24284625//24981863//26404942
chr15:67462900-67462901(+) m6A CDS//exon       24284625//24981863//26404942
chr15:67462971-67462972(+) m6A exon//intron       24284625//24981863
chr15:67466703-67466704(+) m6A exon//intron       24284625
chr15:67466805-67466806(+) m6A exon//intron       24284625
chr15:67473784-67473785(+) Cm CDS//intron       -
chr15:67482753-67482754(+) m6A CDS//exon//intron       24284625//24209618//24981863
chr15:67482876-67482877(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//26404942//27773535//22608085
chr15:67482943-67482944(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr15:67483023-67483024(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr15:67483035-67483036(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr15:67483056-67483057(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr15:67483073-67483074(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483144-67483145(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483180-67483181(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483229-67483230(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483246-67483247(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483310-67483311(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483358-67483359(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483405-67483406(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483430-67483431(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483480-67483481(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483512-67483513(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483525-67483526(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483562-67483563(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67483916-67483917(+) m6A 3'UTR//intron       24284625//24981863
chr15:67483927-67483928(+) m6A 3'UTR//intron       24284625//24981863
chr15:67484050-67484051(+) m6A 3'UTR//intron       26404942
chr15:67484252-67484253(+) m6A 3'UTR//intron       24209618//24981863//26404942
chr15:67484320-67484321(+) m6A 3'UTR//intron       24209618//24981863//26404942
chr15:67484329-67484330(+) m6A 3'UTR//intron       24981863//26404942
chr15:67484334-67484335(+) m6A 3'UTR//intron       24981863//26404942
chr15:67484616-67484617(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr15:67484642-67484643(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67484675-67484676(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67484712-67484713(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67484720-67484721(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67484730-67484731(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67484830-67484831(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//22575960//22608085
chr15:67484870-67484871(+) m6A 3'UTR//intron       24284625//24209618
chr15:67484878-67484879(+) m6A 3'UTR//intron       24284625//24209618
chr15:67485027-67485028(+) m6A 3'UTR//intron       24981863
chr15:67485134-67485135(+) m6A 3'UTR//intron       24981863//26404942
chr15:67485187-67485188(+) m6A 3'UTR//intron       24981863//26404942
chr15:67485202-67485203(+) m6A 3'UTR//intron       24981863//26404942
chr15:67485289-67485290(+) m6A 3'UTR//exon       26404942
chr15:67485323-67485324(+) m6A 3'UTR//exon       26404942
chr15:67485510-67485511(+) m6A 3'UTR//exon       26404942
chr15:67485525-67485526(+) m6A 3'UTR       26404942
chr15:67485548-67485549(+) m6A 3'UTR       26404942
chr15:67485684-67485685(+) m6A 3'UTR       24981863
chr15:67485711-67485712(+) m6A 3'UTR       24981863
chr15:67485871-67485872(+) m6A 3'UTR       24284625
chr15:67485909-67485910(+) m6A 3'UTR       24284625
chr15:67485924-67485925(+) m6A 3'UTR       24284625
chr15:67485951-67485952(+) m6A 3'UTR       24284625
chr15:67486071-67486072(+) m6A 3'UTR       26404942
chr15:67486164-67486165(+) m6A 3'UTR       26404942
chr15:67486385-67486386(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22575960//22608085
chr15:67486439-67486440(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22575960//22608085
chr15:67486513-67486514(+) m6A 3'UTR       24284625//24981863//26404942
chr15:67486518-67486519(+) m6A 3'UTR       24284625//24981863//26404942
chr15:67486677-67486678(+) m6A 3'UTR       24209618//24981863//26404942//22608085
chr15:67486744-67486745(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr15:67486762-67486763(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr15:67486784-67486785(+) m6A 3'UTR       24209618//24981863//26404942//22608085
chr15:67486799-67486800(+) m6A 3'UTR       24209618//24981863//26404942//22608085
chr15:67486908-67486909(+) m6A 3'UTR       24284625//24981863//26404942
chr15:67486917-67486918(+) m6A 3'UTR       24284625//24981863//26404942
chr15:67486972-67486973(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22608085
chr15:67487053-67487054(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085
chr15:67487060-67487061(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085
chr15:67487074-67487075(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085
chr15:67487094-67487095(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67487142-67487143(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:67487253-67487254(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr15:67487285-67487286(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SMAD3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug CTC-523E23.1
Panobinostat       6918837
l-685,458       5479543
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: CTC-523E23.1
Interactor2: SMAD3

Evidence Support:


Prediction-Evidence miRTarBase//miRWalk
Support Database ViRBase

References:


PMID 33475497 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Our data revealed that 709 miRNAs target these mRNAs, among which 145 functional MTIs were found and were subsequently selected as the most important interactions for further examination.

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