Detail Information

Basic Information:


  VIRBase ID:  

HHID00109220

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548am-5p:           NEGR1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548am-5p NEGR1
miRBase
Accession/Entrez ID		 MIMAT0022740 257194
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DMML2433//IGLON4//KILON//Ntra

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548am-5p
rs1023899452 chrX:16627065    G/T
rs1319380894 chrX:16627063    C/G
rs181147953 chrX:16627076    T/G
rs768483765 chrX:16627055    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NEGR1
chr1:72700628(-) A-I      intronic
chr1:72700566(-) A-I      intronic
chr1:72699924(-) A-I      intronic
chr1:72699921(-) A-I      intronic
chr1:72699920(-) A-I      intronic
chr1:72699887(-) A-I      intronic
chr1:72699426(-) A-I      intronic
chr1:72699420(-) A-I      intronic
chr1:72699375(-) A-I      intronic
chr1:72699361(-) A-I      intronic
chr1:72032473(-) A-I      intronic
chr1:72718041(-) A-I      intronic
chr1:72740436(-) A-I      intronic
chr1:72740441(-) A-I      intronic
chr1:72740448(-) A-I      intronic
chr1:72740454(-) A-I      intronic
chr1:72740456(-) A-I      intronic
chr1:72740468(-) A-I      intronic
chr1:72151258(-) A-I      intronic
chr1:72600092(-) A-I      intronic
chr1:72634471(-) A-I      intronic
chr1:72740470(-) A-I      intronic
chr1:72638857(-) A-I      intronic
chr1:72638757(-) A-I      intronic
chr1:72638773(-) A-I      intronic
chr1:72638854(-) A-I      intronic
chr1:72225129(-) A-I      intronic
chr1:72638858(-) A-I      intronic
chr1:72586686(-) A-I      intronic
chr1:72638737(-) A-I      intronic
chr1:72627508(-) A-I      intronic
chr1:72627473(-) A-I      intronic
chr1:72225185(-) A-I      intronic
chr1:72225157(-) A-I      intronic
chr1:72225155(-) A-I      intronic
chr1:72701777(-) A-I      intronic
chr1:72634500(-) A-I      intronic
chr1:72634467(-) A-I      intronic
chr1:72633960(-) A-I      intronic
chr1:72633829(-) A-I      intronic
chr1:72633808(-) A-I      intronic
chr1:72628082(-) A-I      intronic
chr1:72627969(-) A-I      intronic
chr1:72627967(-) A-I      intronic
chr1:72627642(-) A-I      intronic
chr1:72627602(-) A-I      intronic
chr1:72627520(-) A-I      intronic
chr1:72627516(-) A-I      intronic
chr1:72627494(-) A-I      intronic
chr1:72627450(-) A-I      intronic
chr1:72627429(-) A-I      intronic
chr1:72558970(-) A-I      intronic
chr1:72558601(-) A-I      intronic
chr1:72554595(-) A-I      intronic
chr1:72553558(-) A-I      intronic
chr1:72492858(-) A-I      intronic
chr1:72411912(-) A-I      intronic
chr1:72335756(-) A-I      intronic
chr1:72335738(-) A-I      intronic
chr1:72241576(-) A-I      intronic
chr1:72241302(-) A-I      intronic
chr1:72241223(-) A-I      intronic
chr1:72241166(-) A-I      intronic
chr1:72241161(-) A-I      intronic
chr1:72241089(-) A-I      intronic
chr1:72238056(-) A-I      intronic
chr1:72225069(-) A-I      intronic
chr1:72225057(-) A-I      intronic
chr1:72225048(-) A-I      intronic
chr1:72073621(-) A-I      intronic
chr1:71971182(-) A-I      intronic
chr1:71971145(-) A-I      intronic
chr1:71916411(-) A-I      intronic
chr1:72241247(-) A-I      intronic
chr1:72720347(-) A-I      intronic
chr1:72720333(-) A-I      intronic
chr1:72720285(-) A-I      intronic
chr1:72720273(-) A-I      intronic
chr1:72720263(-) A-I      intronic
chr1:72720237(-) A-I      intronic
chr1:72718016(-) A-I      intronic
chr1:72718000(-) A-I      intronic
chr1:72717818(-) A-I      intronic
chr1:72639588(-) A-I      intronic
chr1:72639482(-) A-I      intronic
chr1:72639454(-) A-I      intronic
chr1:72638887(-) A-I      intronic
chr1:72638886(-) A-I      intronic
chr1:72638782(-) A-I      intronic
chr1:72634531(-) A-I      intronic
chr1:72638818(-) A-I      intronic
chr1:72241412(-) A-I      intronic
chr1:72628128(-) A-I      intronic
chr1:72562600(-) A-I      intronic
chr1:72558851(-) A-I      intronic
chr1:72544596(-) A-I      intronic
chr1:71923652(-) A-I      intronic
chr1:72225119(-) A-I      intronic
chr1:72553424(-) A-I      intronic
chr1:72314690(-) A-I      intronic
chr1:72333011(-) A-I      intronic
chr1:71896703(-) A-I      intronic
chr1:72627878(-) A-I      intronic
chr1:72622706(-) A-I      intronic
chr1:72714173(-) A-I      intronic
chr1:72553552(-) A-I      intronic
chr1:72639477(-) A-I      intronic
chr1:71900518(-) A-I      intronic
chr1:72720338(-) A-I      intronic
chr1:72627524(-) A-I      intronic
chr1:72554546(-) A-I      intronic
chr1:72195334(-) A-I      intronic
chr1:72553400(-) A-I      intronic
chr1:71921153(-) A-I      intronic
chr1:72638860(-) A-I      intronic
chr1:72340557(-) A-I      intronic
chr1:72720141(-) A-I      intronic
chr1:72225145(-) A-I      intronic
chr1:72638724(-) A-I      intronic
chr1:72554589(-) A-I      intronic
chr1:72195458(-) A-I      intronic
chr1:72628048(-) A-I      intronic
chr1:72638859(-) A-I      intronic
chr1:72639539(-) A-I      intronic
chr1:72241662(-) A-I      intronic
chr1:72599986(-) A-I      intronic
chr1:72639407(-) A-I      intronic
chr1:72717816(-) A-I      intronic
chr1:72314710(-) A-I      intronic
chr1:72638822(-) A-I      intronic
chr1:72600803(-) A-I      intronic
chr1:72627918(-) A-I      intronic
chr1:72314711(-) A-I      intronic
chr1:72634461(-) A-I      intronic
chr1:72622810(-) A-I      intronic
chr1:72032567(-) A-I      intronic
chr1:72644674(-) A-I      intronic
chr1:72342158(-) A-I      intronic
chr1:72411848(-) A-I      intronic
chr1:72638744(-) A-I      intronic
chr1:72553404(-) A-I      intronic
chr1:72718015(-) A-I      intronic
chr1:72544595(-) A-I      intronic
chr1:72639488(-) A-I      intronic
chr1:72634355(-) A-I      intronic
chr1:72367536(-) A-I      intronic
chr1:72639441(-) A-I      intronic
chr1:72389720(-) A-I      intronic
chr1:72543420(-) A-I      intronic
chr1:72627454(-) A-I      intronic
chr1:72644470(-) A-I      intronic
chr1:72700735(-) A-I      intronic
chr1:72492769(-) A-I      intronic
chr1:72225382(-) A-I      intronic
chr1:72411800(-) A-I      intronic
chr1:72717792(-) A-I      intronic
chr1:72241628(-) A-I      intronic
chr1:72699235(-) A-I      intronic
chr1:72644836(-) A-I      intronic
chr1:72627506(-) A-I      intronic
chr1:72241554(-) A-I      intronic
chr1:72558396(-) A-I      intronic
chr1:72393559(-) A-I      intronic
chr1:72492785(-) A-I      intronic
chr1:72638950(-) A-I      intronic
chr1:72721408(-) A-I      intronic
chr1:71966318(-) A-I      intronic
chr1:72082121(-) A-I      intronic
chr1:72241418(-) A-I      intronic
chr1:72542674(-) A-I      intronic
chr1:72739725(-) A-I      intronic
chr1:72195420(-) A-I      intronic
chr1:72492747(-) A-I      intronic
chr1:72639514(-) A-I      intronic
chr1:71923418(-) A-I      intronic
chr1:72627627(-) A-I      intronic
chr1:72335727(-) A-I      intronic
chr1:72241564(-) A-I      intronic
chr1:72627490(-) A-I      intronic
chr1:72553551(-) A-I      intronic
chr1:72699180(-) A-I      intronic
chr1:72600159(-) A-I      intronic
chr1:72340609(-) A-I      intronic
chr1:72627621(-) A-I      intronic
chr1:72154343(-) A-I      intronic
chr1:72225118(-) A-I      intronic
chr1:72627890(-) A-I      intronic
chr1:72314651(-) A-I      intronic
chr1:72600160(-) A-I      intronic
chr1:72721261(-) A-I      intronic
chr1:72241503(-) A-I      intronic
chr1:72639504(-) A-I      intronic
chr1:72558928(-) A-I      intronic
chr1:72554640(-) A-I      intronic
chr1:71896702(-) A-I      intronic
chr1:72551577(-) A-I      intronic
chr1:72543412(-) A-I      intronic
chr1:72628063(-) A-I      intronic
chr1:72638850(-) A-I      intronic
chr1:72401676(-) A-I      intronic
chr1:72553506(-) A-I      intronic
chr1:72627483(-) A-I      intronic
chr1:72558363(-) A-I      intronic
chr1:72627446(-) A-I      intronic
chr1:72639367(-) A-I      intronic
chr1:72492753(-) A-I      intronic
chr1:72082081(-) A-I      intronic
chr1:72033714(-) A-I      intronic
chr1:72553478(-) A-I      intronic
chr1:72558472(-) A-I      intronic
chr1:72542716(-) A-I      intronic
chr1:72639595(-) A-I      intronic
chr1:72241318(-) A-I      intronic
chr1:72335670(-) A-I      intronic
chr1:72542742(-) A-I      intronic
chr1:72699336(-) A-I      intronic
chr1:72553031(-) A-I      intronic
chr1:72638755(-) A-I      intronic
chr1:72558394(-) A-I      intronic
chr1:72638805(-) A-I      intronic
chr1:72229690(-) A-I      intronic
chr1:72411957(-) A-I      intronic
chr1:72721331(-) A-I      intronic
chr1:72644471(-) A-I      intronic
chr1:72599922(-) A-I      intronic
chr1:72241508(-) A-I      intronic
chr1:72699174(-) A-I      intronic
chr1:72699249(-) A-I      intronic
chr1:72558927(-) A-I      intronic
chr1:72393649(-) A-I      intronic
chr1:72342115(-) A-I      intronic
chr1:72558404(-) A-I      intronic
chr1:72627620(-) A-I      intronic
chr1:72558498(-) A-I      intronic
chr1:72597731(-) A-I      intronic
chr1:72558431(-) A-I      intronic
chr1:72721437(-) A-I      intronic
chr1:72558505(-) A-I      intronic
chr1:71922063(-) A-I      intronic
chr1:72376449(-) A-I      intronic
chr1:72382192(-) A-I      intronic
chr1:72542670(-) A-I      intronic
chr1:72340602(-) A-I      intronic
chr1:72661843(-) A-I      intronic
chr1:72241416(-) A-I      intronic
chr1:72627500(-) A-I      intronic
chr1:72122129(-) A-I      intronic
chr1:72597705(-) A-I      intronic
chr1:72639379(-) A-I      intronic
chr1:72412695(-) A-I      intronic
chr1:72717876(-) A-I      intronic
chr1:72558859(-) A-I      intronic
chr1:72628024(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NEGR1
chr1:72748061-72748062(-) m6A CDS       24209618//25456834
chr1:72748072-72748073(-) m6A CDS       24209618//25456834
chr1:72748136-72748137(-) m6A CDS       24209618//25456834//22575960
chr1:72748172-72748173(-) m6A CDS       24209618//25456834
chr1:72748245-72748246(-) m6A 5'UTR       25456834
chr1:72748324-72748325(-) m6A 5'UTR       25456834
chr1:72748369-72748370(-) m6A 5'UTR       25456834//24981863
chr1:72748383-72748384(-) m6A 5'UTR       25456834//24981863
chr1:72748393-72748394(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548am-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Urine     -
NEGR1
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548am-5p
Interactor2: NEGR1

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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