Detail Information

Basic Information:


  VIRBase ID:  

HHID00109195

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548am-5p:           SNX16:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548am-5p SNX16
miRBase
Accession/Entrez ID		 MIMAT0022740 64089
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548am-5p
rs1023899452 chrX:16627065    G/T
rs1319380894 chrX:16627063    C/G
rs181147953 chrX:16627076    T/G
rs768483765 chrX:16627055    G/A

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNX16
chr8:82711915-82711916(-) m6A 3'UTR       27773535
chr8:82713419-82713420(-) m6A 3'UTR       27773535
chr8:82713640-82713641(-) m6A 3'UTR       24981863//27773535//22608085
chr8:82713648-82713649(-) m6A 3'UTR       24981863//27773535//22608085
chr8:82713655-82713656(-) m6A 3'UTR       24981863//27773535//22608085
chr8:82713702-82713703(-) m6A 3'UTR       27773535//22608085
chr8:82713735-82713736(-) m6A CDS       27773535
chr8:82751903-82751904(-) m6A CDS       24981863//22608085
chr8:82751923-82751924(-) m6A CDS       24981863//22608085
chr8:82751936-82751937(-) m6A CDS       24981863//22608085
chr8:82751946-82751947(-) m6A CDS       24981863//22608085
chr8:82751954-82751955(-) m6A CDS       24981863//22608085
chr8:82751998-82751999(-) m6A CDS//intron       24209618//24981863//22608085
chr8:82752058-82752059(-) m6A CDS//intron       24209618//24981863//22608085
chr8:82752062-82752063(-) m6A CDS//intron       -
chr8:82752084-82752085(-) m6A CDS       -
chr8:82752156-82752157(-) m6A CDS       24284625//27773535//22608085
chr8:82752180-82752181(-) m6A CDS       24284625//27773535//22608085
chr8:82752260-82752261(-) m6A 5'UTR       24284625//24981863//27773535//22608085
chr8:82752454-82752455(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr8:82754052-82754053(-) m6A 5'UTR//intron       -
chr8:82754079-82754080(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548am-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Urine     -
SNX16
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548am-5p
Interactor2: SNX16

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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